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The map label for this gene is fni [H]

Identifier: 169630323

GI number: 169630323

Start: 3278595

End: 3279563

Strand: Direct

Name: fni [H]

Synonym: MAB_3242

Alternate gene names: 169630323

Gene position: 3278595-3279563 (Clockwise)

Preceding gene: 169630315

Following gene: 169630324

Centisome position: 64.7

GC content: 68.21

Gene sequence:

>969_bases
GTGCAGTACGTCACCCGCACCACGGGACTGGAGCGGCTCGACCTGCCCTATATGGCGTTACCCAACTCCAGTCTCGCCGG
CGTCGACTTGTCCACCGAGTTCTTGGGCAGGCGGCTGGCTGCTCCGGTGCTCATCGGTGCCATGACCGGCGGCGCGAAGC
TCGCGGCCACCATCAACCGAAACTTGGCCGCGGCCGCCCAGGAGCTCGGCATCGGCATGATGCTCGGTTCGCAGCGGGTG
ATGCTGGTGGAACCGGACAGCGCCGATACTTTCGCGGTACGTGAGGTCGCTCCCGACATCCTGCTCATCGGCAATATCGG
GCTCGCACAGCTGGGCAACATAGCCCCGGCCGCTCAGCTCAACTCCCTGGTACGGCGGGTGGGTGCCGACGCGCTGGCGG
TGCACACCAACCCCCTGCAAGAGGCCGTGCAACCCGGAGGCGATACCGACTTCACCGGGCAGGTGTATCGCCTCGCCGAA
CTGACCCATGCGGTCGAATTCCCGGTGCTTCTCAAGGAAGTCGGCCACGGCATCAGCGGGGCCGCCGCACGCCGGCTCGG
CGGATGCCGACTGGCGGCGATCGACGTCGCGGGCGCCGGCGGCACCTCGTGGGCGCGCGTCGAGCAGTTCGTGCGGTTCG
GCGCGATCACCTCTCCCGAACTTGCCGAGTGGGGCATCCCAACCGCCGAAGCCCTGGTCGAGGTGCATGCCGAGCTACCG
CATATGCCCCTGATCGGATCGGGCGGCATCCGTACCGGCATGGACGCCGCCAAGGCGATCGCACTGGGCGCCAGCGTGGT
GTCGGTTGCCCTGCCGCTCCTGGCTCCGGCGGTGCAGTCGCCCCAGGCCGTGGTCGCCTGGCTACAGCAGTTCCTGGACG
AGCTACGCATCGCCATGCACTGCGCCGACGTCAGCACCATCGCGGATCTGCGGCGAATTTCCCTGCGTCCCCGTTCAAGC
CCCCGCTAA

Upstream 100 bases:

>100_bases
GACGGCAACGATCGCAATGGCGATCCACACTTCAAGAGGCACCAGGGCATTGTTACAGGAACGCAAGAAGCGCCACATTG
ACGCCTGCCTGAGCGATCCA

Downstream 100 bases:

>100_bases
ACACGGGAAACCCGTCATACACTGCGGGAGTCACACCGTGTTGGCTGTGTGTTTTGGGTCCCAGGAGGTTCTTGGCATGA
ATATCCAATTCGGGGGACGT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MQYVTRTTGLERLDLPYMALPNSSLAGVDLSTEFLGRRLAAPVLIGAMTGGAKLAATINRNLAAAAQELGIGMMLGSQRV
MLVEPDSADTFAVREVAPDILLIGNIGLAQLGNIAPAAQLNSLVRRVGADALAVHTNPLQEAVQPGGDTDFTGQVYRLAE
LTHAVEFPVLLKEVGHGISGAAARRLGGCRLAAIDVAGAGGTSWARVEQFVRFGAITSPELAEWGIPTAEALVEVHAELP
HMPLIGSGGIRTGMDAAKAIALGASVVSVALPLLAPAVQSPQAVVAWLQQFLDELRIAMHCADVSTIADLRRISLRPRSS
PR

Sequences:

>Translated_322_residues
MQYVTRTTGLERLDLPYMALPNSSLAGVDLSTEFLGRRLAAPVLIGAMTGGAKLAATINRNLAAAAQELGIGMMLGSQRV
MLVEPDSADTFAVREVAPDILLIGNIGLAQLGNIAPAAQLNSLVRRVGADALAVHTNPLQEAVQPGGDTDFTGQVYRLAE
LTHAVEFPVLLKEVGHGISGAAARRLGGCRLAAIDVAGAGGTSWARVEQFVRFGAITSPELAEWGIPTAEALVEVHAELP
HMPLIGSGGIRTGMDAAKAIALGASVVSVALPLLAPAVQSPQAVVAWLQQFLDELRIAMHCADVSTIADLRRISLRPRSS
PR
>Mature_322_residues
MQYVTRTTGLERLDLPYMALPNSSLAGVDLSTEFLGRRLAAPVLIGAMTGGAKLAATINRNLAAAAQELGIGMMLGSQRV
MLVEPDSADTFAVREVAPDILLIGNIGLAQLGNIAPAAQLNSLVRRVGADALAVHTNPLQEAVQPGGDTDFTGQVYRLAE
LTHAVEFPVLLKEVGHGISGAAARRLGGCRLAAIDVAGAGGTSWARVEQFVRFGAITSPELAEWGIPTAEALVEVHAELP
HMPLIGSGGIRTGMDAAKAIALGASVVSVALPLLAPAVQSPQAVVAWLQQFLDELRIAMHCADVSTIADLRRISLRPRSS
PR

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 33633; Mature: 33633

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYVTRTTGLERLDLPYMALPNSSLAGVDLSTEFLGRRLAAPVLIGAMTGGAKLAATINR
CCCCCCCCCCHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCEEEEHHHH
NLAAAAQELGIGMMLGSQRVMLVEPDSADTFAVREVAPDILLIGNIGLAQLGNIAPAAQL
HHHHHHHHHCCEEEECCCEEEEECCCCCCCEEHHHHCCCEEEECCCCHHHHCCCCCHHHH
NSLVRRVGADALAVHTNPLQEAVQPGGDTDFTGQVYRLAELTHAVEFPVLLKEVGHGISG
HHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AAARRLGGCRLAAIDVAGAGGTSWARVEQFVRFGAITSPELAEWGIPTAEALVEVHAELP
HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCC
HMPLIGSGGIRTGMDAAKAIALGASVVSVALPLLAPAVQSPQAVVAWLQQFLDELRIAMH
CCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
CADVSTIADLRRISLRPRSSPR
HHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQYVTRTTGLERLDLPYMALPNSSLAGVDLSTEFLGRRLAAPVLIGAMTGGAKLAATINR
CCCCCCCCCCHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCEEEEHHHH
NLAAAAQELGIGMMLGSQRVMLVEPDSADTFAVREVAPDILLIGNIGLAQLGNIAPAAQL
HHHHHHHHHCCEEEECCCEEEEECCCCCCCEEHHHHCCCEEEECCCCHHHHCCCCCHHHH
NSLVRRVGADALAVHTNPLQEAVQPGGDTDFTGQVYRLAELTHAVEFPVLLKEVGHGISG
HHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AAARRLGGCRLAAIDVAGAGGTSWARVEQFVRFGAITSPELAEWGIPTAEALVEVHAELP
HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCC
HMPLIGSGGIRTGMDAAKAIALGASVVSVALPLLAPAVQSPQAVVAWLQQFLDELRIAMH
CCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
CADVSTIADLRRISLRPRSSPR
HHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA