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The map label for this gene is rimM

Identifier: 169630308

GI number: 169630308

Start: 3263344

End: 3263865

Strand: Reverse

Name: rimM

Synonym: MAB_3227c

Alternate gene names: 169630308

Gene position: 3263865-3263344 (Counterclockwise)

Preceding gene: 169630309

Following gene: 169630307

Centisome position: 64.41

GC content: 64.18

Gene sequence:

>522_bases
ATGGAGCTAGTGGTCGGGCGTATCGCCAGGGCGCACGGCGTCACCGGCGAGTTGTCGGTGGAGGTCCGTACCGACGATCC
CGACGAGCGTTTCGCTGTTGGTTCGGTATTGACCGGACGGCTGCCCCGTGGCGGTGGCAGCCGCCGGTTCACCGTCGAAT
CGGTGCGTGAGCACAGTGGGCGGTTGCTGATCAGGTTCGCCGGCGTATCCGATCGTGACGCGGCTGATGCGTTGCGGGGA
ACCCTTTTCATGGTGGACACCACCGATCTCCCACCGATCGAGGATCCTGACGAGTTCTACGATCACCAGCTCGAAGGGCT
CGCGGTGCGGACTCTGGACGGGGCCGCCGTCGGCACCGTTTCCGAGGTCTTGCATACCCCCGGTGGGGAATTGCTTTCGG
TGCGTGGGTCCGAGCGGCGGGAGATTCTGGTGCCGTTCGTCTCCGCGATCGTCACGTCGATCTCTTTGGCGGACAAGGTT
ATCGAGATTGACCCCCCGGAAGGGCTGCTGGATCTGTCGTGA

Upstream 100 bases:

>100_bases
GGTCGGGGCGGGCGCACCGCCACCGCCCTGCGCACCCTCGTCGCAGGTGTGGGCGGCCGTGGCATCCGGGTCGACGTGGT
GGACACCGACCGGTAGCTCC

Downstream 100 bases:

>100_bases
GAATCCCGTCATGAAAATAGACGTCGTCACGATCTTCCCGGAATATCTGCAACCCGTGCGGCAGTCCTTGCCGGGCAAGG
CTATTGACGCTGGTTTGGTC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MELVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESVREHSGRLLIRFAGVSDRDAADALRG
TLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLDGAAVGTVSEVLHTPGGELLSVRGSERREILVPFVSAIVTSISLADKV
IEIDPPEGLLDLS

Sequences:

>Translated_173_residues
MELVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESVREHSGRLLIRFAGVSDRDAADALRG
TLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLDGAAVGTVSEVLHTPGGELLSVRGSERREILVPFVSAIVTSISLADKV
IEIDPPEGLLDLS
>Mature_173_residues
MELVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESVREHSGRLLIRFAGVSDRDAADALRG
TLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLDGAAVGTVSEVLHTPGGELLSVRGSERREILVPFVSAIVTSISLADKV
IEIDPPEGLLDLS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=173, Percent_Identity=27.7456647398844, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_MYCA9 (B1MDI4)

Other databases:

- EMBL:   CU458896
- RefSeq:   YP_001703957.1
- ProteinModelPortal:   B1MDI4
- SMR:   B1MDI4
- EnsemblBacteria:   EBMYCT00000007358
- GeneID:   5965729
- GenomeReviews:   CU458896_GR
- KEGG:   mab:MAB_3227c
- GeneTree:   EBGT00050000017443
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- BioCyc:   MABS561007:MAB_3227C-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18599; Mature: 18599

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESVREHSG
CCCHHHHHHHHCCCCCEEEEEEECCCCCHHEEHHHHHCCCCCCCCCCCEEEHHHHHHCCC
RLLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLDGAAVGTV
EEEEEECCCCCCCHHHHHCCEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCHHHHH
SEVLHTPGGELLSVRGSERREILVPFVSAIVTSISLADKVIEIDPPEGLLDLS
HHHHHCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHCEEEEECCCCCCEECC
>Mature Secondary Structure
MELVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGSRRFTVESVREHSG
CCCHHHHHHHHCCCCCEEEEEEECCCCCHHEEHHHHHCCCCCCCCCCCEEEHHHHHHCCC
RLLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLDGAAVGTV
EEEEEECCCCCCCHHHHHCCEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCHHHHH
SEVLHTPGGELLSVRGSERREILVPFVSAIVTSISLADKVIEIDPPEGLLDLS
HHHHHCCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHCEEEEECCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA