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The map label for this gene is ycdC [C]

Identifier: 169630287

GI number: 169630287

Start: 3248682

End: 3249440

Strand: Reverse

Name: ycdC [C]

Synonym: MAB_3206c

Alternate gene names: 169630287

Gene position: 3249440-3248682 (Counterclockwise)

Preceding gene: 169630289

Following gene: 169630286

Centisome position: 64.13

GC content: 61.0

Gene sequence:

>759_bases
GTGGCGTTCGGTGAACCCGATAAAGATCACGACCGCTGTGCGGATGTCATCACGGCGATTGCCAGCAAGTGGGGGGATGA
TGACCGAAGGAAGGATGTGACGGATTTCGTGACCGAAGCCGGTGAGCTGACGCGGCGCCCTCGGGGTAGGCCCCGTAAGG
GTGGGGAAGGGGTGTCGGCAGACGCGATTTTTACCGCCGCGTTGCGCGCCTTCGCCACTCACGGGTATCAGGGCATGTCA
ATGCGCACGCTCAACCGAGAGTTGGGTGTCAGTCATAACCTGCTACATCAACGTTTTTCGTCCAAGGAACAGCTTTGGTA
CGCCGCCGTTGATTGGGGATTTCAAGCAATTATCGACAAGGTTCTGGCGGACGATGATGAGAGCCTGGGTCCGTCGGCGC
GTATCAAGCGGTTCATCAAGACTTTTGTCATGTTCGCCGCGGAGCACCCGGATCTGATCCGCATCATGGATATCGAGGCG
GGTCAGGACAGCGAGCGGTTACAGCACATCTGCAAGGCGTATGTGCTGCCCATGCAGGAGCGGCTGGGACCGGTGTACGA
GGAAGCCGTGGCCGCCGGTGAACTGCGTGAAGTGCCGCTGCAGACCAGTTTCTTCCTCATCACCTCGGGTACCGCCGCGC
TGTTCAGCAGCGCCGCCCTGGCCCGCACGGTGTTCGGTGATGACGTGCTCGACCCCGACCAGGTCAAGGCCCACGCCGAG
GCGGCCGCCGAACTGATCATCAGGGGACTGTTGCCGTGA

Upstream 100 bases:

>100_bases
GATCAGTTTGAATGCCCCCGCAGCCAGGTGCACGACGGCGAGTACGCCGGCACAGACCCATAACCAGGCATCCATCGCGT
CAGTATGCCCCGCCGTAACG

Downstream 100 bases:

>100_bases
CGTGGGTGCCCATCGGCACGCTTTCCTCCGTATAGTCAAGGCAATTGACATAGAGGATTCGACGCAGGAGGCGATATGAC
ACGCCCGCTCCACGAGTTGC

Product: putative transcriptional regulator, TetR

Products: NA

Alternate protein names: TetR Family Regulator; TetR-Family Transcriptional Regulator; Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MAFGEPDKDHDRCADVITAIASKWGDDDRRKDVTDFVTEAGELTRRPRGRPRKGGEGVSADAIFTAALRAFATHGYQGMS
MRTLNRELGVSHNLLHQRFSSKEQLWYAAVDWGFQAIIDKVLADDDESLGPSARIKRFIKTFVMFAAEHPDLIRIMDIEA
GQDSERLQHICKAYVLPMQERLGPVYEEAVAAGELREVPLQTSFFLITSGTAALFSSAALARTVFGDDVLDPDQVKAHAE
AAAELIIRGLLP

Sequences:

>Translated_252_residues
MAFGEPDKDHDRCADVITAIASKWGDDDRRKDVTDFVTEAGELTRRPRGRPRKGGEGVSADAIFTAALRAFATHGYQGMS
MRTLNRELGVSHNLLHQRFSSKEQLWYAAVDWGFQAIIDKVLADDDESLGPSARIKRFIKTFVMFAAEHPDLIRIMDIEA
GQDSERLQHICKAYVLPMQERLGPVYEEAVAAGELREVPLQTSFFLITSGTAALFSSAALARTVFGDDVLDPDQVKAHAE
AAAELIIRGLLP
>Mature_251_residues
AFGEPDKDHDRCADVITAIASKWGDDDRRKDVTDFVTEAGELTRRPRGRPRKGGEGVSADAIFTAALRAFATHGYQGMSM
RTLNRELGVSHNLLHQRFSSKEQLWYAAVDWGFQAIIDKVLADDDESLGPSARIKRFIKTFVMFAAEHPDLIRIMDIEAG
QDSERLQHICKAYVLPMQERLGPVYEEAVAAGELREVPLQTSFFLITSGTAALFSSAALARTVFGDDVLDPDQVKAHAEA
AAELIIRGLLP

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27860; Mature: 27729

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGEPDKDHDRCADVITAIASKWGDDDRRKDVTDFVTEAGELTRRPRGRPRKGGEGVSA
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
DAIFTAALRAFATHGYQGMSMRTLNRELGVSHNLLHQRFSSKEQLWYAAVDWGFQAIIDK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCHHHEEHHHHHHHHHHHHHH
VLADDDESLGPSARIKRFIKTFVMFAAEHPDLIRIMDIEAGQDSERLQHICKAYVLPMQE
HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHH
RLGPVYEEAVAAGELREVPLQTSFFLITSGTAALFSSAALARTVFGDDVLDPDQVKAHAE
HHCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
AAAELIIRGLLP
HHHHHHHHHCCC
>Mature Secondary Structure 
AFGEPDKDHDRCADVITAIASKWGDDDRRKDVTDFVTEAGELTRRPRGRPRKGGEGVSA
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
DAIFTAALRAFATHGYQGMSMRTLNRELGVSHNLLHQRFSSKEQLWYAAVDWGFQAIIDK
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCHHHEEHHHHHHHHHHHHHH
VLADDDESLGPSARIKRFIKTFVMFAAEHPDLIRIMDIEAGQDSERLQHICKAYVLPMQE
HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHH
RLGPVYEEAVAAGELREVPLQTSFFLITSGTAALFSSAALARTVFGDDVLDPDQVKAHAE
HHCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
AAAELIIRGLLP
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA