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The map label for this gene is xerC [H]

Identifier: 169630285

GI number: 169630285

Start: 3246865

End: 3247779

Strand: Reverse

Name: xerC [H]

Synonym: MAB_3204c

Alternate gene names: 169630285

Gene position: 3247779-3246865 (Counterclockwise)

Preceding gene: 169630286

Following gene: 169630281

Centisome position: 64.09

GC content: 67.32

Gene sequence:

>915_bases
GTGACACCGCAACTGGCCGCCATTCTCGACGAATTCGCCGAGCACCTTGCGCTGGAACGCGGCCGGTCGGTGCACACCCA
GCGTGCCTATCGCGGCGACCTGACGCTGCTGTTCGACCATCTGTCGGCCTCCAATCCCGAGGCCACCCTGGCCGACCTGT
CGCTGCCGGTACTGCGGTCCTGGTTGGGTGCACAGGCCAGGCAAGGTGCGGCGCGCTCCACCGTGGCGCGGCGTACGTCG
GCGGTGAAGATCTTTACCGCCTGGGCGACGCGTCGCGGCTTGCTGCCGACAGATCCCGCGATTCGCTTGCAGCAGCCCAA
GTCTCGTCGAACCCTTCCCGCGGTGTTACGGCAGGACCAAGCCGCCGCGGCGATGGAAGCCGCGCATTCCGGTGCCGAAC
AAGACGATCCAATGGCACTGCGGGATCGTTTGATCGTCGAGATGCTGTACGCCACCGGGATCCGTGTCAGCGAGTTGTGT
GGACTGGATATCGACGATATTGACCGGCCACGAAAGGTGCTGCGCGTCTTGGGCAAGGGCGACAAGGAGCGCACCGTGCC
GTTCGGTGATCCGGCCGCCGATGCCCTGAGCGCGTGGCTGGATCGCGGACGGCCTCATCTGGCGGTCCCTGCATCTGGAG
CCGCACTGCTGCTGGGCGCACGCGGCCGGCGCGTCGATCCGCGGCAGGTCCGCACCGTGGTGCATCAAACCATGTCTGCC
GTTCCCGGCGCTCCCGACATCGGGCCGCATGGGTTGCGGCACAGCGCCGCTACCCATCTACTCGAGGGCGGCGCGGATCT
TCGCGTCGTGCAGGAGCTGCTCGGGCATTCCACCCTGGCGACCACCCAGCTTTACACCCATGTCACTGTGGCGCGGTTGC
GCGCTGTACACGACCAGGCGCATCCGCGGGCGTGA

Upstream 100 bases:

>100_bases
GGGCGGCGTCGATCTCGGGATACTGGCGGCGTGGCCGCACCGAGGAGACATTCCGCGTGTGGAAGCAGGAGCTGGCGGCC
GCCGAAGCTACCGTGAAGGA

Downstream 100 bases:

>100_bases
CCCTCAATGGTGTCGCTTGTTCCTTCGGGTGAATACCGCACCGAGGCGACTGGCCCAGCGGCGTAGCCGATGACGATGGG
CGCGAGCCGCCAGGTGATTC

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTPQLAAILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEATLADLSLPVLRSWLGAQARQGAARSTVARRTS
AVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQAAAAMEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELC
GLDIDDIDRPRKVLRVLGKGDKERTVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSA
VPGAPDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA

Sequences:

>Translated_304_residues
MTPQLAAILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEATLADLSLPVLRSWLGAQARQGAARSTVARRTS
AVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQAAAAMEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELC
GLDIDDIDRPRKVLRVLGKGDKERTVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSA
VPGAPDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA
>Mature_303_residues
TPQLAAILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEATLADLSLPVLRSWLGAQARQGAARSTVARRTSA
VKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQAAAAMEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCG
LDIDDIDRPRKVLRVLGKGDKERTVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSAV
PGAPDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=306, Percent_Identity=40.5228758169935, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1790244, Length=296, Percent_Identity=33.7837837837838, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1790767, Length=193, Percent_Identity=28.4974093264249, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32951; Mature: 32820

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPQLAAILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEATLADLSLPVLRS
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
WLGAQARQGAARSTVARRTSAVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQ
HHHHHHHCCHHHHHHHHHHHHHHEEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
AAAAMEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCGLDIDDIDRPRKVLRVLGKG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCHHHHHHHHHHCCC
DKERTVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSA
CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
VPGAPDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVARLRAVHDQA
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
HPRA
CCCC
>Mature Secondary Structure 
TPQLAAILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEATLADLSLPVLRS
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
WLGAQARQGAARSTVARRTSAVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQ
HHHHHHHCCHHHHHHHHHHHHHHEEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
AAAAMEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCGLDIDDIDRPRKVLRVLGKG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCHHHHHHHHHHCCC
DKERTVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSA
CCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
VPGAPDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVARLRAVHDQA
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
HPRA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA