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The map label for this gene is ycdC [C]

Identifier: 169630281

GI number: 169630281

Start: 3242024

End: 3242980

Strand: Reverse

Name: ycdC [C]

Synonym: MAB_3199c

Alternate gene names: 169630281

Gene position: 3242980-3242024 (Counterclockwise)

Preceding gene: 169630285

Following gene: 169630280

Centisome position: 64.0

GC content: 67.29

Gene sequence:

>957_bases
ATGACACGGGCAGGCACCAAGGGGATGCCCCGCGCAGAGCGGGAACGGCAGATCCTCGATGCCGCATGCCAGGAATTCGG
CCGCAGCGGATATGTGGGCATGTCACTGGCTGCGGTCGCCGCTGCGGTCGGCGTCTCCAAACCCATGGTGTTGGCGTACT
TCGGATCCAAAGAGCAGCTCTATATCGCATGTGTGGAGCGTGCCGGGGCCACCGTCGGCGATCACATCGAGGCGGCGATG
ACGGCCGCGCCGCCCACATTGGCATTGCCGCGTGCCGTGCTGCAGGCCATCTTCCAGGCATTGGCGCCTCGTCCGTCTGA
TTGGCTGGTGATCTGGGATCAGACCCTGCCCGAGGGGAGCGAGGCCCTGGCCGCGGCGCGTGTCGCCAGAACCCGGCTCG
CCGCGCTGGCCGGTCAGGGCGTGGCCGCGGTGGGAAGTGCGGCCACGCAGCTGCGTGACGCGCAGGACATCGGTGTGCTC
ACGCAAGGTTGGATGGGGATGGTCGGCGCCATGATCACCTGGTGGATCAGGCATCCGGAACAGAGTGCGGAGCAGATGGC
CGAGCGCGCCAGCCGCCTGATCGGAATCATCGCCAGTGCCGGGATATCGGAGGCGGAGGCGCCAGAGGGCGGCGCCGTGC
CACGTCCCGGCACGCCGGTGCGCGGATCTGGTTCCGGGCAGCCCCTCAATGCGGCGTTCGATCTCTTCGGCCGGCGCTGG
GCCATCCTCGTGGTGTGGGAACTGCGTTCGGGCACAAAGACTTTGCCTGAGCTGAAGGCGGAGATGGGTGACGCCTCCAG
TAGTGTGCTCGCTACTCGTCTCAAGGAGCTGACCGCGGCGCACATCGTACGCAACCAGGACGGGCAATACTCGCTGACGA
CTGTGGGCAAGGGCCTGCTGGTGGCGTTGGCGCCACTGCACCTCTGGGCAAAAGCCTGGTCGGCGTCGGTCCGGTGA

Upstream 100 bases:

>100_bases
TTAACAGTCGGTCATATCAACGTCACACCGATCGGTCTACTGTGGCGCGCGCCACACCAATGTGTCATGTCTGCCGACTG
CGAACTGGTAGAAGGGATTC

Downstream 100 bases:

>100_bases
CTAAAGTGCCTACCATGCGCGCCGGAATCCCTGCCATGACCGTCGCCGCCACCGCGCTGGCTCTGAGTCTCGGACTGGTC
GCCCCCGCGGCGGCGGTCGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; HxlR Family Transcriptional Regulator; TetR-Family Transcriptional Regulator; Transcriptional Regulator HxlR Family; Transcriptional Regulator TetR Family; TetR-Family Regulatory Protein; MarR Family Transcriptional Regulator; Helix-Turn-Helix HxlR Type; Transcriptional Regulator Superfamily; TetR Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTRAGTKGMPRAERERQILDAACQEFGRSGYVGMSLAAVAAAVGVSKPMVLAYFGSKEQLYIACVERAGATVGDHIEAAM
TAAPPTLALPRAVLQAIFQALAPRPSDWLVIWDQTLPEGSEALAAARVARTRLAALAGQGVAAVGSAATQLRDAQDIGVL
TQGWMGMVGAMITWWIRHPEQSAEQMAERASRLIGIIASAGISEAEAPEGGAVPRPGTPVRGSGSGQPLNAAFDLFGRRW
AILVVWELRSGTKTLPELKAEMGDASSSVLATRLKELTAAHIVRNQDGQYSLTTVGKGLLVALAPLHLWAKAWSASVR

Sequences:

>Translated_318_residues
MTRAGTKGMPRAERERQILDAACQEFGRSGYVGMSLAAVAAAVGVSKPMVLAYFGSKEQLYIACVERAGATVGDHIEAAM
TAAPPTLALPRAVLQAIFQALAPRPSDWLVIWDQTLPEGSEALAAARVARTRLAALAGQGVAAVGSAATQLRDAQDIGVL
TQGWMGMVGAMITWWIRHPEQSAEQMAERASRLIGIIASAGISEAEAPEGGAVPRPGTPVRGSGSGQPLNAAFDLFGRRW
AILVVWELRSGTKTLPELKAEMGDASSSVLATRLKELTAAHIVRNQDGQYSLTTVGKGLLVALAPLHLWAKAWSASVR
>Mature_317_residues
TRAGTKGMPRAERERQILDAACQEFGRSGYVGMSLAAVAAAVGVSKPMVLAYFGSKEQLYIACVERAGATVGDHIEAAMT
AAPPTLALPRAVLQAIFQALAPRPSDWLVIWDQTLPEGSEALAAARVARTRLAALAGQGVAAVGSAATQLRDAQDIGVLT
QGWMGMVGAMITWWIRHPEQSAEQMAERASRLIGIIASAGISEAEAPEGGAVPRPGTPVRGSGSGQPLNAAFDLFGRRWA
ILVVWELRSGTKTLPELKAEMGDASSSVLATRLKELTAAHIVRNQDGQYSLTTVGKGLLVALAPLHLWAKAWSASVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33484; Mature: 33353

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS51118 HTH_HXLR ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAGTKGMPRAERERQILDAACQEFGRSGYVGMSLAAVAAAVGVSKPMVLAYFGSKEQL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEE
YIACVERAGATVGDHIEAAMTAAPPTLALPRAVLQAIFQALAPRPSDWLVIWDQTLPEGS
EEEEHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCH
EALAAARVARTRLAALAGQGVAAVGSAATQLRDAQDIGVLTQGWMGMVGAMITWWIRHPE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QSAEQMAERASRLIGIIASAGISEAEAPEGGAVPRPGTPVRGSGSGQPLNAAFDLFGRRW
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCE
AILVVWELRSGTKTLPELKAEMGDASSSVLATRLKELTAAHIVRNQDGQYSLTTVGKGLL
EEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCHHH
VALAPLHLWAKAWSASVR
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRAGTKGMPRAERERQILDAACQEFGRSGYVGMSLAAVAAAVGVSKPMVLAYFGSKEQL
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCEE
YIACVERAGATVGDHIEAAMTAAPPTLALPRAVLQAIFQALAPRPSDWLVIWDQTLPEGS
EEEEHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCH
EALAAARVARTRLAALAGQGVAAVGSAATQLRDAQDIGVLTQGWMGMVGAMITWWIRHPE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QSAEQMAERASRLIGIIASAGISEAEAPEGGAVPRPGTPVRGSGSGQPLNAAFDLFGRRW
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCE
AILVVWELRSGTKTLPELKAEMGDASSSVLATRLKELTAAHIVRNQDGQYSLTTVGKGLL
EEEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHCCHHH
VALAPLHLWAKAWSASVR
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA