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The map label for this gene is ideR [H]

Identifier: 169630112

GI number: 169630112

Start: 3081214

End: 3081900

Strand: Direct

Name: ideR [H]

Synonym: MAB_3029

Alternate gene names: 169630112

Gene position: 3081214-3081900 (Clockwise)

Preceding gene: 169630111

Following gene: 169630115

Centisome position: 60.81

GC content: 66.23

Gene sequence:

>687_bases
GTGAACGATCTTGTCGATACGACAGAGATGTATCTGCGCACGATCTACGACCTCGAGGAAGAGGGCGTCGTGCCGCTGCG
TGCCCGCATCGCCGAGAGGCTTGAGCAGAGCGGCCCGACGGTCAGCCAGACGGTGGCACGCATGGAGCGCGACGGCCTGC
TGAACGTCGCCGGCGACCGCCATCTGGAACTCACCGATAAGGGCCGGGCACTCGCGGTTTCCGTGATGCGTAAGCACCGG
CTGGCCGAGTGCCTGCTGGTCGACATCATCGGGTTGCCGTGGGAGGACGTGCACGCCGAGGCATGCCGCTGGGAACACGT
GATGAGTGAGGACGTTGAGCGCCGTCTGCTCACGGTGCTCAACAATCCGACCACGTCGCCGTTCGGTAACCCAATCCCCG
GACTTTCCGAGCTCGGCGTCCCTGCCGACAGGTCCGAGAGTGCCAGCGCGGTGCGGCTCACCGAGATCCCGTCGGGATCG
CAGGTCGCCGTGGTGGTGCGCAGGCTGGCCGAGCACGTGCAGGCCGACACCGACCTGTTGTCCCGACTCAAGGACGCCGG
TGTCGTGCCCAACGCGCGCGTGACCGTGGAGTCCTCCCCCGATGGCGTCATCATCATCATCCCCGGGCACGAGAGCGTCG
AGCTGCCCCACGAGATGGCTCACGCCGTGATGGTGGAGAAGGTCTAG

Upstream 100 bases:

>100_bases
GGACCTACTACCCTGCCCTCGGGGCGCTGCGTTCTGGAAGCGCAGCGCCCCGATTTACGTTGTAGGTCGGTAGACTGAGC
ACGACCGTAAGGGGCGAGTA

Downstream 100 bases:

>100_bases
CCCGCGCGCCGGATCTGTCTGGGTGGCAGGCTGATTCCCAGCTCGTGAGCGATCCGGTAACCGGTGTCGGCCAAGGTACC
GATCTCGTCGGGCCGCATCC

Product: Iron-dependent repressor IdeR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNDLVDTTEMYLRTIYDLEEEGVVPLRARIAERLEQSGPTVSQTVARMERDGLLNVAGDRHLELTDKGRALAVSVMRKHR
LAECLLVDIIGLPWEDVHAEACRWEHVMSEDVERRLLTVLNNPTTSPFGNPIPGLSELGVPADRSESASAVRLTEIPSGS
QVAVVVRRLAEHVQADTDLLSRLKDAGVVPNARVTVESSPDGVIIIIPGHESVELPHEMAHAVMVEKV

Sequences:

>Translated_228_residues
MNDLVDTTEMYLRTIYDLEEEGVVPLRARIAERLEQSGPTVSQTVARMERDGLLNVAGDRHLELTDKGRALAVSVMRKHR
LAECLLVDIIGLPWEDVHAEACRWEHVMSEDVERRLLTVLNNPTTSPFGNPIPGLSELGVPADRSESASAVRLTEIPSGS
QVAVVVRRLAEHVQADTDLLSRLKDAGVVPNARVTVESSPDGVIIIIPGHESVELPHEMAHAVMVEKV
>Mature_228_residues
MNDLVDTTEMYLRTIYDLEEEGVVPLRARIAERLEQSGPTVSQTVARMERDGLLNVAGDRHLELTDKGRALAVSVMRKHR
LAECLLVDIIGLPWEDVHAEACRWEHVMSEDVERRLLTVLNNPTTSPFGNPIPGLSELGVPADRSESASAVRLTEIPSGS
QVAVVVRRLAEHVQADTDLLSRLKDAGVVPNARVTVESSPDGVIIIIPGHESVELPHEMAHAVMVEKV

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 25054; Mature: 25054

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50944 HTH_DTXR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLVDTTEMYLRTIYDLEEEGVVPLRARIAERLEQSGPTVSQTVARMERDGLLNVAGDR
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEECCCCC
HLELTDKGRALAVSVMRKHRLAECLLVDIIGLPWEDVHAEACRWEHVMSEDVERRLLTVL
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NNPTTSPFGNPIPGLSELGVPADRSESASAVRLTEIPSGSQVAVVVRRLAEHVQADTDLL
CCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHH
SRLKDAGVVPNARVTVESSPDGVIIIIPGHESVELPHEMAHAVMVEKV
HHHHHCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNDLVDTTEMYLRTIYDLEEEGVVPLRARIAERLEQSGPTVSQTVARMERDGLLNVAGDR
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEECCCCC
HLELTDKGRALAVSVMRKHRLAECLLVDIIGLPWEDVHAEACRWEHVMSEDVERRLLTVL
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NNPTTSPFGNPIPGLSELGVPADRSESASAVRLTEIPSGSQVAVVVRRLAEHVQADTDLL
CCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHH
SRLKDAGVVPNARVTVESSPDGVIIIIPGHESVELPHEMAHAVMVEKV
HHHHHCCCCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]