Click here to switch to the map view.

The map label for this gene is dgoR [C]

Identifier: 169630101

GI number: 169630101

Start: 3074621

End: 3075349

Strand: Direct

Name: dgoR [C]

Synonym: MAB_3018

Alternate gene names: 169630101

Gene position: 3074621-3075349 (Clockwise)

Preceding gene: 169630100

Following gene: 169630102

Centisome position: 60.68

GC content: 65.16

Gene sequence:

>729_bases
ATGGCACTGCAACCGATCGCGCGTCAGTCGATACCCGACGAGATATTCAGCCAGCTCGCGGCGCAGGTTCTCACCGGAGA
TCGCATCCCCGGCGACACCCTGCCCAGCGAACGGGCCCTTGCCGAAGCCCTCGGAGTGTCGCGCGCCGCGGTCCGCGAGG
CACTCGGGCGCCTGGAACGTTCGGGGCTGATTCAGATCCGCCAGGGCGGATCGACGGTGATCCGCGACTACCGCAGCGAC
GCCGGCTTCGACGTGCTGCCGCTGCTACTGGCGTATGGCGGGGATGTGGACCGTCGCACCCTGGCCAGCGTCATCGAGGC
GCGGGCCATCATCGGCCCTCAGGTTGCGCGACTGGCCGCACAACGAGCACATCAAACCCCCGGTGTCGCCGATCGGCTCC
GCGCGATGACCAGCGAGTTGGAAGCGGAAGACGATCCGCTGCAACGGATGTGGCAAGCGCTCGGATTCTGGGAGCTGGTC
ATCGATACCGCCGACTCAATCGCATTTCGACTCGTGTTCAACACCATGCGCGACTCGTATGTGCGGGCATTGGATGTCCT
GGTGAACGTGATGGCGGCCGAGGTCGGAGACATCGGCCATTATCGCGCACTCGCCGACGCTATCGCACTGGCGGACCCTG
ACGCCGCACAGGATGCCGCCGCCGGAATGCTCGCCTTGGGCACCAAGGCTTTTGACAAGCTGCTGCGTGAGATGGAGAAG
GAGAGATGA

Upstream 100 bases:

>100_bases
ATCGATCCGGCGCTGCTCGTGGAGATCGAAGCCGACGCGATCGTCGAATAAATTGGTCAGACCACTAGACCTCTTACCAA
TCAGGTGTTACGGTCACGAC

Downstream 100 bases:

>100_bases
CCCGCACCGCTACCCGCAAGGGCATGACCCTGCGCGACGCTCTTGCCGAATTCATCAAGCACCCCACGCCGTGGATGCTG
CTCGCCTGGTCCAGCGCCCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MALQPIARQSIPDEIFSQLAAQVLTGDRIPGDTLPSERALAEALGVSRAAVREALGRLERSGLIQIRQGGSTVIRDYRSD
AGFDVLPLLLAYGGDVDRRTLASVIEARAIIGPQVARLAAQRAHQTPGVADRLRAMTSELEAEDDPLQRMWQALGFWELV
IDTADSIAFRLVFNTMRDSYVRALDVLVNVMAAEVGDIGHYRALADAIALADPDAAQDAAAGMLALGTKAFDKLLREMEK
ER

Sequences:

>Translated_242_residues
MALQPIARQSIPDEIFSQLAAQVLTGDRIPGDTLPSERALAEALGVSRAAVREALGRLERSGLIQIRQGGSTVIRDYRSD
AGFDVLPLLLAYGGDVDRRTLASVIEARAIIGPQVARLAAQRAHQTPGVADRLRAMTSELEAEDDPLQRMWQALGFWELV
IDTADSIAFRLVFNTMRDSYVRALDVLVNVMAAEVGDIGHYRALADAIALADPDAAQDAAAGMLALGTKAFDKLLREMEK
ER
>Mature_241_residues
ALQPIARQSIPDEIFSQLAAQVLTGDRIPGDTLPSERALAEALGVSRAAVREALGRLERSGLIQIRQGGSTVIRDYRSDA
GFDVLPLLLAYGGDVDRRTLASVIEARAIIGPQVARLAAQRAHQTPGVADRLRAMTSELEAEDDPLQRMWQALGFWELVI
DTADSIAFRLVFNTMRDSYVRALDVLVNVMAAEVGDIGHYRALADAIALADPDAAQDAAAGMLALGTKAFDKLLREMEKE
R

Specific function: Repressor For The Dgorkat Operon. Binds D-Galactonate As An Inducer. [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=237, Percent_Identity=25.7383966244726, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26249; Mature: 26118

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALQPIARQSIPDEIFSQLAAQVLTGDRIPGDTLPSERALAEALGVSRAAVREALGRLER
CCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SGLIQIRQGGSTVIRDYRSDAGFDVLPLLLAYGGDVDRRTLASVIEARAIIGPQVARLAA
CCCEEEECCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QRAHQTPGVADRLRAMTSELEAEDDPLQRMWQALGFWELVIDTADSIAFRLVFNTMRDSY
HHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRALDVLVNVMAAEVGDIGHYRALADAIALADPDAAQDAAAGMLALGTKAFDKLLREMEK
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ER
CC
>Mature Secondary Structure 
ALQPIARQSIPDEIFSQLAAQVLTGDRIPGDTLPSERALAEALGVSRAAVREALGRLER
CCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SGLIQIRQGGSTVIRDYRSDAGFDVLPLLLAYGGDVDRRTLASVIEARAIIGPQVARLAA
CCCEEEECCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QRAHQTPGVADRLRAMTSELEAEDDPLQRMWQALGFWELVIDTADSIAFRLVFNTMRDSY
HHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRALDVLVNVMAAEVGDIGHYRALADAIALADPDAAQDAAAGMLALGTKAFDKLLREMEK
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ER
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]