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The map label for this gene is ycdK [C]

Identifier: 169630100

GI number: 169630100

Start: 3074185

End: 3074571

Strand: Direct

Name: ycdK [C]

Synonym: MAB_3017

Alternate gene names: 169630100

Gene position: 3074185-3074571 (Clockwise)

Preceding gene: 169630098

Following gene: 169630101

Centisome position: 60.67

GC content: 64.34

Gene sequence:

>387_bases
ATGGGACGTTTCAGGATCTCGTCGGACGGTGAGTGGGAAGCGGCAGTCGGATACTCGCGGGCGGTACGGGTTGGCGCGCA
TATCGCCGTCGCCGGCACCACCGCGGCCCGCCCGAACCAACCGCCGGCAGGAGGTGATGACATCGCCGAACAGACCCACG
AGGTACTGCGCCGCATCGAGTCGGCGCTTAGCCAGACGGGTGCCTCGTTGAGTGATGTGGTGCGCACCCGCATCTTCGTG
ACCGACATCAGTCGGTGGCGCGAAGTCGGTTTGGTCCACGGTGCGTTTTTTGGCGATATTCGACCGGCCGCCACGATGGT
CGAGGTGTCAGCGCTCATCGATCCGGCGCTGCTCGTGGAGATCGAAGCCGACGCGATCGTCGAATAA

Upstream 100 bases:

>100_bases
TGGCCGGCCGGAGCTGTATGCCAATGCGAATGCGATCAGTCACATGGCAGTCCAATTATTCGATCGCCCGCGATATTCCC
CGCCGCCTACGCTGCCCGCC

Downstream 100 bases:

>100_bases
ATTGGTCAGACCACTAGACCTCTTACCAATCAGGTGTTACGGTCACGACATGGCACTGCAACCGATCGCGCGTCAGTCGA
TACCCGACGAGATATTCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MGRFRISSDGEWEAAVGYSRAVRVGAHIAVAGTTAARPNQPPAGGDDIAEQTHEVLRRIESALSQTGASLSDVVRTRIFV
TDISRWREVGLVHGAFFGDIRPAATMVEVSALIDPALLVEIEADAIVE

Sequences:

>Translated_128_residues
MGRFRISSDGEWEAAVGYSRAVRVGAHIAVAGTTAARPNQPPAGGDDIAEQTHEVLRRIESALSQTGASLSDVVRTRIFV
TDISRWREVGLVHGAFFGDIRPAATMVEVSALIDPALLVEIEADAIVE
>Mature_127_residues
GRFRISSDGEWEAAVGYSRAVRVGAHIAVAGTTAARPNQPPAGGDDIAEQTHEVLRRIESALSQTGASLSDVVRTRIFVT
DISRWREVGLVHGAFFGDIRPAATMVEVSALIDPALLVEIEADAIVE

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13668; Mature: 13536

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRFRISSDGEWEAAVGYSRAVRVGAHIAVAGTTAARPNQPPAGGDDIAEQTHEVLRRIE
CCCCCCCCCCCCHHHHCHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SALSQTGASLSDVVRTRIFVTDISRWREVGLVHGAFFGDIRPAATMVEVSALIDPALLVE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEE
IEADAIVE
ECCHHHCC
>Mature Secondary Structure 
GRFRISSDGEWEAAVGYSRAVRVGAHIAVAGTTAARPNQPPAGGDDIAEQTHEVLRRIE
CCCCCCCCCCCHHHHCHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SALSQTGASLSDVVRTRIFVTDISRWREVGLVHGAFFGDIRPAATMVEVSALIDPALLVE
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEE
IEADAIVE
ECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]