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The map label for this gene is tdcF [C]

Identifier: 169629993

GI number: 169629993

Start: 2959798

End: 2960187

Strand: Reverse

Name: tdcF [C]

Synonym: MAB_2910c

Alternate gene names: 169629993

Gene position: 2960187-2959798 (Counterclockwise)

Preceding gene: 169629994

Following gene: 169629992

Centisome position: 58.42

GC content: 62.31

Gene sequence:

>390_bases
GTGAAGATCCAGATCGAGACCAACGCGGCCCCAGATCCCGTCGGCGCGTATTCACAAGCTGTCCGCATCGGCGACACCCT
GCAGGTTTCCGGCCAAGTCGGGATCGACCCCCATACCGAATCGCTGGTTGGTGGAACCGTCTACGCGCAGACCCTTCAGG
CGTTGCGCAACGTTCAGGCGATCCTGACCGCGGCGGGCGCCGATTTCGAAGACGTGCTCATGCTGAGGGTGTTCCTCAAT
GCTCCCGAGGGATTTGCCGAACTCAACCAGGCGTTTGCGGACTACCTCCAGAAGCCCTATCCGGCCCGCACGACCCTTTT
CGGTGGGCTGCCGCCCGGGCTGTTGGTAGAGATCGACGCCCTTGCAAAGATTTCTGCGGCCAGGCAGTGA

Upstream 100 bases:

>100_bases
TCCTCGGCGGCAATGCCCAGCGTGTTCTGAAGGAAGCACTACCCGGCGCGTAGCCGAGCGCTTTGATGACGCGCACCGTC
AAACAAAAGGAGTTCTACCG

Downstream 100 bases:

>100_bases
TCGTGGGAATTCATCGTCTGGACTATGGGTGTCATTCATTGGTAGTCAGGTGGAGCGGTCGGGCTGGAGCACAATGAGAA
TCGCCGTCGCCGGAGCCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKIQIETNAAPDPVGAYSQAVRIGDTLQVSGQVGIDPHTESLVGGTVYAQTLQALRNVQAILTAAGADFEDVLMLRVFLN
APEGFAELNQAFADYLQKPYPARTTLFGGLPPGLLVEIDALAKISAARQ

Sequences:

>Translated_129_residues
MKIQIETNAAPDPVGAYSQAVRIGDTLQVSGQVGIDPHTESLVGGTVYAQTLQALRNVQAILTAAGADFEDVLMLRVFLN
APEGFAELNQAFADYLQKPYPARTTLFGGLPPGLLVEIDALAKISAARQ
>Mature_129_residues
MKIQIETNAAPDPVGAYSQAVRIGDTLQVSGQVGIDPHTESLVGGTVYAQTLQALRNVQAILTAAGADFEDVLMLRVFLN
APEGFAELNQAFADYLQKPYPARTTLFGGLPPGLLVEIDALAKISAARQ

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=119, Percent_Identity=40.3361344537815, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI87082213, Length=130, Percent_Identity=36.1538461538462, Blast_Score=69, Evalue=8e-14,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=35.7142857142857, Blast_Score=67, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=119, Percent_Identity=44.5378151260504, Blast_Score=96, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI25148896, Length=119, Percent_Identity=44.5378151260504, Blast_Score=96, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI71982068, Length=119, Percent_Identity=44.5378151260504, Blast_Score=96, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19921376, Length=119, Percent_Identity=36.9747899159664, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13683; Mature: 13683

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIQIETNAAPDPVGAYSQAVRIGDTLQVSGQVGIDPHTESLVGGTVYAQTLQALRNVQA
CEEEEECCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ILTAAGADFEDVLMLRVFLNAPEGFAELNQAFADYLQKPYPARTTLFGGLPPGLLVEIDA
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEEHHH
LAKISAARQ
HHHHHHCCC
>Mature Secondary Structure
MKIQIETNAAPDPVGAYSQAVRIGDTLQVSGQVGIDPHTESLVGGTVYAQTLQALRNVQA
CEEEEECCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ILTAAGADFEDVLMLRVFLNAPEGFAELNQAFADYLQKPYPARTTLFGGLPPGLLVEIDA
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEEHHH
LAKISAARQ
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]