Click here to switch to the map view.

The map label for this gene is ynfL [C]

Identifier: 169629848

GI number: 169629848

Start: 2812513

End: 2813337

Strand: Reverse

Name: ynfL [C]

Synonym: MAB_2764c

Alternate gene names: 169629848

Gene position: 2813337-2812513 (Counterclockwise)

Preceding gene: 169629855

Following gene: 169629842

Centisome position: 55.52

GC content: 61.21

Gene sequence:

>825_bases
ATGTCCGTCGCACCCCTGAGTCAGCGGATAAAGGCCCTGGAAAACGAACTAGGCGAACAACTCTTCGACAGGTCGACCCA
TCATGTCGAATTGACCAATGCTGGGGAGAGGCTGGTTCCGCTCGCGCGGACCATCGTGTCTGACTTCGATGCCTTGCCGC
GAAAACTCCTGTTGGGCATGCCCGCTGGTGCGGTACGGGTGGGCGTCACCCGTGCCCTGAACGGCCGGAGCCGTCGGACG
ATATCGGACGTCCTGGCCGAGCTCTCACGGGATCACACCTACATCGTCAATCAAGTCGCGTCACGCGACATGGAACGACA
GCTGCTGGCCGGAAGCATCGATCTGGGGGTTTCCCGGGTCCCTGCGGCAAGCGCTCGTGTGCAGGCCCGGCTGTTGAACA
CCGAGCGGCTGGCGATTCTTGCCGACGCGTCCGCGTTTCCCGCGAAAGTCAGTGTCCAGCTGGCGGATCTACGCGGCTAC
ACCTACGTGCACGGGCCGGAGGCCTGGGAGATCGCGTCGATGCTCGAGGCCCAGCATGTTCTGTTCGATAGCGGCGTACT
CAATGATTCCCTGACGCGCTGCGACGACGTTTCCAGCATGCTGTTGACCCTGCGAAACTCAACAAAGATCACCTTGCGTT
CACTTCAATCGGAAGAACTCAAGGGTCTGGATCCTGCCGAGTTCGTACTGCTGCCGATCGACGATCTCACCGTCGAAATA
CCCACGATGCTGCAATGGCGCGCCGAGGATGTTGATCGCCTACCGATCGCGGAGGCCATCAAGTCGATCACCGCCGCGGT
GGCGGGCGATCGTCTCGGCGATTAG

Upstream 100 bases:

>100_bases
CAATAGTCAGTAGCATTCGAGAATGGAGATTCATCACCTGCGATATTTTCTGGCAGTCGCGAGGGAATTGAGTTTCACCA
AGGCTGCCCAAAATCTCCAT

Downstream 100 bases:

>100_bases
CCCAGTTGGCTTGCCGCGGCCTCATCGAGCAGCCACACCGTGCGCTCGATGCCCTTGGCGCCGGCCGCGGGCACATCGAC
AGGGTCGGCACCGCCGACGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: LysR-Family Transcriptional Regulator; Transcriptional Regulator LysR Family Protein; Transcriptional Regulator; LysR Family Regulatory Protein

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSVAPLSQRIKALENELGEQLFDRSTHHVELTNAGERLVPLARTIVSDFDALPRKLLLGMPAGAVRVGVTRALNGRSRRT
ISDVLAELSRDHTYIVNQVASRDMERQLLAGSIDLGVSRVPAASARVQARLLNTERLAILADASAFPAKVSVQLADLRGY
TYVHGPEAWEIASMLEAQHVLFDSGVLNDSLTRCDDVSSMLLTLRNSTKITLRSLQSEELKGLDPAEFVLLPIDDLTVEI
PTMLQWRAEDVDRLPIAEAIKSITAAVAGDRLGD

Sequences:

>Translated_274_residues
MSVAPLSQRIKALENELGEQLFDRSTHHVELTNAGERLVPLARTIVSDFDALPRKLLLGMPAGAVRVGVTRALNGRSRRT
ISDVLAELSRDHTYIVNQVASRDMERQLLAGSIDLGVSRVPAASARVQARLLNTERLAILADASAFPAKVSVQLADLRGY
TYVHGPEAWEIASMLEAQHVLFDSGVLNDSLTRCDDVSSMLLTLRNSTKITLRSLQSEELKGLDPAEFVLLPIDDLTVEI
PTMLQWRAEDVDRLPIAEAIKSITAAVAGDRLGD
>Mature_273_residues
SVAPLSQRIKALENELGEQLFDRSTHHVELTNAGERLVPLARTIVSDFDALPRKLLLGMPAGAVRVGVTRALNGRSRRTI
SDVLAELSRDHTYIVNQVASRDMERQLLAGSIDLGVSRVPAASARVQARLLNTERLAILADASAFPAKVSVQLADLRGYT
YVHGPEAWEIASMLEAQHVLFDSGVLNDSLTRCDDVSSMLLTLRNSTKITLRSLQSEELKGLDPAEFVLLPIDDLTVEIP
TMLQWRAEDVDRLPIAEAIKSITAAVAGDRLGD

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29939; Mature: 29807

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAPLSQRIKALENELGEQLFDRSTHHVELTNAGERLVPLARTIVSDFDALPRKLLLGM
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PAGAVRVGVTRALNGRSRRTISDVLAELSRDHTYIVNQVASRDMERQLLAGSIDLGVSRV
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PAASARVQARLLNTERLAILADASAFPAKVSVQLADLRGYTYVHGPEAWEIASMLEAQHV
CCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHHH
LFDSGVLNDSLTRCDDVSSMLLTLRNSTKITLRSLQSEELKGLDPAEFVLLPIDDLTVEI
HHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHEEEEECCCCEEEC
PTMLQWRAEDVDRLPIAEAIKSITAAVAGDRLGD
CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SVAPLSQRIKALENELGEQLFDRSTHHVELTNAGERLVPLARTIVSDFDALPRKLLLGM
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PAGAVRVGVTRALNGRSRRTISDVLAELSRDHTYIVNQVASRDMERQLLAGSIDLGVSRV
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PAASARVQARLLNTERLAILADASAFPAKVSVQLADLRGYTYVHGPEAWEIASMLEAQHV
CCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHHH
LFDSGVLNDSLTRCDDVSSMLLTLRNSTKITLRSLQSEELKGLDPAEFVLLPIDDLTVEI
HHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHEEEEECCCCEEEC
PTMLQWRAEDVDRLPIAEAIKSITAAVAGDRLGD
CHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA