Click here to switch to the map view.

The map label for this gene is pecS [H]

Identifier: 169629733

GI number: 169629733

Start: 2689114

End: 2689605

Strand: Reverse

Name: pecS [H]

Synonym: MAB_2648c

Alternate gene names: 169629733

Gene position: 2689605-2689114 (Counterclockwise)

Preceding gene: 169629736

Following gene: 169629732

Centisome position: 53.08

GC content: 66.67

Gene sequence:

>492_bases
ATGGCCGTCCACGAGAGCTCGATCACCACACGTGACTGGACGCTGAACAGGCCAGAGCTCGACACCTCACCGATGGAGGT
GATCGGGGCGCTCAAGCGTGCAACGGGGATGCTTGCTCGCCTGCTCGAACCTCTCTACGCGACCTCTGCCATCGCCGAGC
CGGAGCACGACGTGCTGGTGGTGCTCCGTCACCGCAAGGGTCCGGTGATTGCCCGCCACGTCGCCGAGGAACTCGGTGTA
TCGCAGGCGTGGGTGAGCAGAATGCTCCGCAAGCTCGAAGAGCGGGGTTACGTGCGCAGGGAGGCGAACGCCAATGACCG
GCGGGCCGCGATCATCACGATGACAGACAGCGGGCGGTCGGTTGTAGACGAGCTGTTTCCCGAGCGGCTGCGCATCGAGG
CCGAAGCGCTCGCCGGGCTGGGGGATGAGCGCGCTGCCGTTGTCGCGGGCCTGGAGCGGTTGGTGGCGACGCTGAAGGCG
TACGAGGGCTAG

Upstream 100 bases:

>100_bases
ACCGCGGGCGGATGTTTCCGAGCTCCGGATGGCGATGCCACGGTTTCGATAGCCTGGGCCCGACCCGCTTTTACCTGGCA
TACCTGGACCGAGAGGCACG

Downstream 100 bases:

>100_bases
GCCAACAGCACCGCGACTGGCGACATGGCCAAATCGGTTGGCGACGGTCTGGGAGAATGGCGTCATGCATAGCACCGTCA
GCGGGGCCGCCACCACCACC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MAVHESSITTRDWTLNRPELDTSPMEVIGALKRATGMLARLLEPLYATSAIAEPEHDVLVVLRHRKGPVIARHVAEELGV
SQAWVSRMLRKLEERGYVRREANANDRRAAIITMTDSGRSVVDELFPERLRIEAEALAGLGDERAAVVAGLERLVATLKA
YEG

Sequences:

>Translated_163_residues
MAVHESSITTRDWTLNRPELDTSPMEVIGALKRATGMLARLLEPLYATSAIAEPEHDVLVVLRHRKGPVIARHVAEELGV
SQAWVSRMLRKLEERGYVRREANANDRRAAIITMTDSGRSVVDELFPERLRIEAEALAGLGDERAAVVAGLERLVATLKA
YEG
>Mature_162_residues
AVHESSITTRDWTLNRPELDTSPMEVIGALKRATGMLARLLEPLYATSAIAEPEHDVLVVLRHRKGPVIARHVAEELGVS
QAWVSRMLRKLEERGYVRREANANDRRAAIITMTDSGRSVVDELFPERLRIEAEALAGLGDERAAVVAGLERLVATLKAY
EG

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18065; Mature: 17934

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVHESSITTRDWTLNRPELDTSPMEVIGALKRATGMLARLLEPLYATSAIAEPEHDVLV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VLRHRKGPVIARHVAEELGVSQAWVSRMLRKLEERGYVRREANANDRRAAIITMTDSGRS
EEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEECCCCHH
VVDELFPERLRIEAEALAGLGDERAAVVAGLERLVATLKAYEG
HHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVHESSITTRDWTLNRPELDTSPMEVIGALKRATGMLARLLEPLYATSAIAEPEHDVLV
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
VLRHRKGPVIARHVAEELGVSQAWVSRMLRKLEERGYVRREANANDRRAAIITMTDSGRS
EEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEECCCCHH
VVDELFPERLRIEAEALAGLGDERAAVVAGLERLVATLKAYEG
HHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]