Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 169629712

GI number: 169629712

Start: 2667956

End: 2668573

Strand: Reverse

Name: pdtaR [H]

Synonym: MAB_2627c

Alternate gene names: 169629712

Gene position: 2668573-2667956 (Counterclockwise)

Preceding gene: 169629713

Following gene: 169629711

Centisome position: 52.66

GC content: 65.05

Gene sequence:

>618_bases
ATGACCGGCCCGCAGAACACCGAACCGGCGGCTCCCGCACGCCGCGTGCTCGTCGCCGAAGACGAAGCTCTCATCCGCCT
CGACCTGGTCGAGATGCTCCATGAGGAGGGCTATGACGTGGTGGGACAGGCAGGGGACGGCCAAGAGGCCGTTGACCTCG
CCGAGGAGCTCAAACCCGATCTGGTGATCATGGACGTGAAGATGCCGCGCCGAGATGGCATCGACGCCGCATCGGAGATC
GCCACCAAGCGCATTGCCCCCATCGTCATCCTCACCGCATTCAGCCAACGCGACTTGGTCGAGAAGGCACGCGATGCGGG
GGCGATGGCGTACCTCGTCAAACCGTTCTCCAAGACCGACCTGGTACCCGCCATCGAGGTGGCGGTGAGTCGTTTCGGCG
AGCTCACGGCGCTGGAGAAGGAAGTCCAGACCCTGGCGGACAGGCTGGAGACCCGCAAGCTCGTCGAGCGCGCCAAGGGC
GTTCTGCAGTCCACCCAGGGGCTGACCGAACCCGAGGCATTCAAGTGGATCCAGCGTGCCGCCATGGACCGCCGTACCAC
CATGAAACGAGTTGCCGAGGTCGTGCTGGAAACGCTCGACACCGACGCGCCGAGCTGA

Upstream 100 bases:

>100_bases
CCATCAACCAGTGGCGCGATCTCCCACCTTAAGGGATGGGGAATGTCACTTTCACCAGGGTATCGCCGTTCACACGACCA
CATGCGTCACAATGGTCGCC

Downstream 100 bases:

>100_bases
AACACGGGTAAGCACTGCGCGTCGCCCTCGGGTTGGCTATGTTTTCTGATCAGCGTTTCGACCAGACAGCCCCAGCGATT
CGGAGGTAACCGTGCGTGCA

Product: two-component response regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTGPQNTEPAAPARRVLVAEDEALIRLDLVEMLHEEGYDVVGQAGDGQEAVDLAEELKPDLVIMDVKMPRRDGIDAASEI
ATKRIAPIVILTAFSQRDLVEKARDAGAMAYLVKPFSKTDLVPAIEVAVSRFGELTALEKEVQTLADRLETRKLVERAKG
VLQSTQGLTEPEAFKWIQRAAMDRRTTMKRVAEVVLETLDTDAPS

Sequences:

>Translated_205_residues
MTGPQNTEPAAPARRVLVAEDEALIRLDLVEMLHEEGYDVVGQAGDGQEAVDLAEELKPDLVIMDVKMPRRDGIDAASEI
ATKRIAPIVILTAFSQRDLVEKARDAGAMAYLVKPFSKTDLVPAIEVAVSRFGELTALEKEVQTLADRLETRKLVERAKG
VLQSTQGLTEPEAFKWIQRAAMDRRTTMKRVAEVVLETLDTDAPS
>Mature_204_residues
TGPQNTEPAAPARRVLVAEDEALIRLDLVEMLHEEGYDVVGQAGDGQEAVDLAEELKPDLVIMDVKMPRRDGIDAASEIA
TKRIAPIVILTAFSQRDLVEKARDAGAMAYLVKPFSKTDLVPAIEVAVSRFGELTALEKEVQTLADRLETRKLVERAKGV
LQSTQGLTEPEAFKWIQRAAMDRRTTMKRVAEVVLETLDTDAPS

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=138, Percent_Identity=30.4347826086957, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786599, Length=138, Percent_Identity=34.0579710144928, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22552; Mature: 22421

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPQNTEPAAPARRVLVAEDEALIRLDLVEMLHEEGYDVVGQAGDGQEAVDLAEELKPD
CCCCCCCCCCCHHHHEEEECCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHCCCC
LVIMDVKMPRRDGIDAASEIATKRIAPIVILTAFSQRDLVEKARDAGAMAYLVKPFSKTD
EEEEECCCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCHHHHHHCCCCCCC
LVPAIEVAVSRFGELTALEKEVQTLADRLETRKLVERAKGVLQSTQGLTEPEAFKWIQRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AMDRRTTMKRVAEVVLETLDTDAPS
HHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TGPQNTEPAAPARRVLVAEDEALIRLDLVEMLHEEGYDVVGQAGDGQEAVDLAEELKPD
CCCCCCCCCCHHHHEEEECCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHCCCC
LVIMDVKMPRRDGIDAASEIATKRIAPIVILTAFSQRDLVEKARDAGAMAYLVKPFSKTD
EEEEECCCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCHHHHHHCCCCCCC
LVPAIEVAVSRFGELTALEKEVQTLADRLETRKLVERAKGVLQSTQGLTEPEAFKWIQRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AMDRRTTMKRVAEVVLETLDTDAPS
HHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]