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The map label for this gene is betI [C]

Identifier: 169629478

GI number: 169629478

Start: 2447849

End: 2448565

Strand: Direct

Name: betI [C]

Synonym: MAB_2392

Alternate gene names: 169629478

Gene position: 2447849-2448565 (Clockwise)

Preceding gene: 169629477

Following gene: 169629480

Centisome position: 48.31

GC content: 62.76

Gene sequence:

>717_bases
ATGACACGTACCGCCGGTAGCCCAGCACGCTCAAGCACGCGTCCCCAGCGTGCCGAGCGGCGGACCCAGGAGGAACGCAG
CGCGGCCATGCGTGGCCGGCTGCTCGATGCCACGGTGGACTGCCTGGTCAAGTATGGATACGCGGGGACCACGACTACCC
GCGTCGCGCAACGTGCCGGTGTCACGCGGGGCGCGTTGGTGCACCACTTCCAATCGAAATCCGAGCTTCTCGGAGAATCA
GTGCGACACTTGGCGTTCAGGCAGGGGCAGGAGATCCTTTCCGAACTCATCGCGCTGGACCGCGACAGCGATGCCGACTT
CATCAGCCGCTGCCTCGATGCGCTCTGGCGCATGCACCAGGGGTCGATGTTCATCGCGACCATGGAACTCTGGATCGCTG
CCCGCACCGATGCAGAACTATCTGCGCAGATGGATCAGTTCGAATTCATTGTGATGCAGCAATTTTCCACCCTGGGGCAA
TCGGTGAGCCAGACCGATGAAGAGCTGCGTGTCATTCGCAACATCACACTGACGGCGATGGATGCCGTGCGGGGAATCCT
GGTCAACAGCATGACGGCGCCGCAGGAGGTTCGCGACCAACGCTGGGCCCGGGCCAAGGCGATGTTGTTGAACATCGTCG
AGTCGCCCGCGGTAGGTGCACCGCTCGACTCGGCTCTGCGCACAATCGACCCCGGAAAGCTGAGCCTTTCCGACTAG

Upstream 100 bases:

>100_bases
ATCCGGAGATCCTCACCTACTTCGGCACCTTGATAGCGGAGTATCAACAGGCCCGCGAAGAAATCAAGCACAGCAAGAAC
GACACGGACGGGCTCGGAGA

Downstream 100 bases:

>100_bases
AGTTCAGCTGCCGCGCACCGGCTGCCGTGCCGCCGCGTCCTCCAGGCGCGACTGCTCGGCCGCAATGACCATGTTGCCGA
AGTACCCGATGAACGACGGA

Product: putative transcriptional regulator, TetR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTRTAGSPARSSTRPQRAERRTQEERSAAMRGRLLDATVDCLVKYGYAGTTTTRVAQRAGVTRGALVHHFQSKSELLGES
VRHLAFRQGQEILSELIALDRDSDADFISRCLDALWRMHQGSMFIATMELWIAARTDAELSAQMDQFEFIVMQQFSTLGQ
SVSQTDEELRVIRNITLTAMDAVRGILVNSMTAPQEVRDQRWARAKAMLLNIVESPAVGAPLDSALRTIDPGKLSLSD

Sequences:

>Translated_238_residues
MTRTAGSPARSSTRPQRAERRTQEERSAAMRGRLLDATVDCLVKYGYAGTTTTRVAQRAGVTRGALVHHFQSKSELLGES
VRHLAFRQGQEILSELIALDRDSDADFISRCLDALWRMHQGSMFIATMELWIAARTDAELSAQMDQFEFIVMQQFSTLGQ
SVSQTDEELRVIRNITLTAMDAVRGILVNSMTAPQEVRDQRWARAKAMLLNIVESPAVGAPLDSALRTIDPGKLSLSD
>Mature_237_residues
TRTAGSPARSSTRPQRAERRTQEERSAAMRGRLLDATVDCLVKYGYAGTTTTRVAQRAGVTRGALVHHFQSKSELLGESV
RHLAFRQGQEILSELIALDRDSDADFISRCLDALWRMHQGSMFIATMELWIAARTDAELSAQMDQFEFIVMQQFSTLGQS
VSQTDEELRVIRNITLTAMDAVRGILVNSMTAPQEVRDQRWARAKAMLLNIVESPAVGAPLDSALRTIDPGKLSLSD

Specific function: Repressor Involved In Choline Regulation Of The Bet Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26440; Mature: 26309

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTAGSPARSSTRPQRAERRTQEERSAAMRGRLLDATVDCLVKYGYAGTTTTRVAQRAG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
VTRGALVHHFQSKSELLGESVRHLAFRQGQEILSELIALDRDSDADFISRCLDALWRMHQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GSMFIATMELWIAARTDAELSAQMDQFEFIVMQQFSTLGQSVSQTDEELRVIRNITLTAM
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAVRGILVNSMTAPQEVRDQRWARAKAMLLNIVESPAVGAPLDSALRTIDPGKLSLSD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TRTAGSPARSSTRPQRAERRTQEERSAAMRGRLLDATVDCLVKYGYAGTTTTRVAQRAG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
VTRGALVHHFQSKSELLGESVRHLAFRQGQEILSELIALDRDSDADFISRCLDALWRMHQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GSMFIATMELWIAARTDAELSAQMDQFEFIVMQQFSTLGQSVSQTDEELRVIRNITLTAM
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAVRGILVNSMTAPQEVRDQRWARAKAMLLNIVESPAVGAPLDSALRTIDPGKLSLSD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]