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The map label for this gene is scpB [H]

Identifier: 169629455

GI number: 169629455

Start: 2425302

End: 2426063

Strand: Direct

Name: scpB [H]

Synonym: MAB_2369

Alternate gene names: 169629455

Gene position: 2425302-2426063 (Clockwise)

Preceding gene: 169629454

Following gene: 169629456

Centisome position: 47.86

GC content: 65.75

Gene sequence:

>762_bases
ATGAGCGAGCAGACGACCGCTGTCGAGGGCACGGAGGAGTCCGCCGAGCCCGACGCCTCAGCGGAAGCCGCCCCCGCGGA
GTCCCTGGAGGACGAAACGGGCGACGGTGAATTCGTTCCGATGGCCGAGGATGAACTCATCAGCACCCTCGAGGCGTTGC
TGCTGGTCGTGGACACCCCGATCAGCGCGGCGGCCGTCGCTTCCGTCGTCGCTCAGCCATTGGACCGTGTAGCCGAAGCA
CTGCAACGGATTTCGGAAATCTTGACCGATCGCAGCAGTGGCATCGATCTGCGTGAGACCGCCGACGGCTGGCGCATGTA
CACCCGCGCCCAGTACGCCCCCTACGTGGAGAAGCTGCTGCTCGATGGCGCACGCTCCAAGCTGACCCGGGCCGCGCTGG
AGACCCTCGCGGTGGTGGCCTACCGGCAGCCGGTGACGAGATCGCGTGTCAGCGCTGTGCGCGGTGTGAACGTCGATGCC
GTCATGCGGACCCTGCTGATGCGGGGCCTGATCGCCGAGGCGGGCACCGACGACGAATCCGGTGCGGTGATGTTCCGCAC
CACCGAGCTGTTCCTCGAGCGGCTTGGGCTGACGTCGCTGTCCGACCTTCCCGATATCGCACCGCTGCTTCCCGATATCG
ATGTGATCGACGACCTATCCGAAAACCTCGGCGACGAGCCGCGGTTCGCGCGGCTCAACCGGACAGCCGATAGCGGTGCT
GGTTCTGGTGATGCTCCCGCTTTTACCGTTGATCAGGACTGA

Upstream 100 bases:

>100_bases
CGGTATTATTCGAGCAATCCGAACCGCTTGGACCGCTCCAAGTTTCATGGACCGGTGAGCGCCCGGCGCAGGATGATCTA
GAAAAGGCAGTGGACTACAC

Downstream 100 bases:

>100_bases
GACCATGAGCGAAGAAGGCATTCGGCTCCAGAAGGTGTTGTCGCAAGCGGGTATTGCGTCACGCCGGGTTGCCGAAAGGA
TGATTTACGACGGTCGCGTC

Product: putative segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MSEQTTAVEGTEESAEPDASAEAAPAESLEDETGDGEFVPMAEDELISTLEALLLVVDTPISAAAVASVVAQPLDRVAEA
LQRISEILTDRSSGIDLRETADGWRMYTRAQYAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVTRSRVSAVRGVNVDA
VMRTLLMRGLIAEAGTDDESGAVMFRTTELFLERLGLTSLSDLPDIAPLLPDIDVIDDLSENLGDEPRFARLNRTADSGA
GSGDAPAFTVDQD

Sequences:

>Translated_253_residues
MSEQTTAVEGTEESAEPDASAEAAPAESLEDETGDGEFVPMAEDELISTLEALLLVVDTPISAAAVASVVAQPLDRVAEA
LQRISEILTDRSSGIDLRETADGWRMYTRAQYAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVTRSRVSAVRGVNVDA
VMRTLLMRGLIAEAGTDDESGAVMFRTTELFLERLGLTSLSDLPDIAPLLPDIDVIDDLSENLGDEPRFARLNRTADSGA
GSGDAPAFTVDQD
>Mature_252_residues
SEQTTAVEGTEESAEPDASAEAAPAESLEDETGDGEFVPMAEDELISTLEALLLVVDTPISAAAVASVVAQPLDRVAEAL
QRISEILTDRSSGIDLRETADGWRMYTRAQYAPYVEKLLLDGARSKLTRAALETLAVVAYRQPVTRSRVSAVRGVNVDAV
MRTLLMRGLIAEAGTDDESGAVMFRTTELFLERLGLTSLSDLPDIAPLLPDIDVIDDLSENLGDEPRFARLNRTADSGAG
SGDAPAFTVDQD

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 27056; Mature: 26925

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQTTAVEGTEESAEPDASAEAAPAESLEDETGDGEFVPMAEDELISTLEALLLVVDTP
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
ISAAAVASVVAQPLDRVAEALQRISEILTDRSSGIDLRETADGWRMYTRAQYAPYVEKLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LDGARSKLTRAALETLAVVAYRQPVTRSRVSAVRGVNVDAVMRTLLMRGLIAEAGTDDES
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
GAVMFRTTELFLERLGLTSLSDLPDIAPLLPDIDVIDDLSENLGDEPRFARLNRTADSGA
CEEEEHHHHHHHHHHCCCHHHCCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCC
GSGDAPAFTVDQD
CCCCCCEEECCCC
>Mature Secondary Structure 
SEQTTAVEGTEESAEPDASAEAAPAESLEDETGDGEFVPMAEDELISTLEALLLVVDTP
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
ISAAAVASVVAQPLDRVAEALQRISEILTDRSSGIDLRETADGWRMYTRAQYAPYVEKLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LDGARSKLTRAALETLAVVAYRQPVTRSRVSAVRGVNVDAVMRTLLMRGLIAEAGTDDES
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
GAVMFRTTELFLERLGLTSLSDLPDIAPLLPDIDVIDDLSENLGDEPRFARLNRTADSGA
CEEEEHHHHHHHHHHCCCHHHCCCHHHHHCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCC
GSGDAPAFTVDQD
CCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA