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The map label for this gene is tetC [H]

Identifier: 169629376

GI number: 169629376

Start: 2338526

End: 2339161

Strand: Direct

Name: tetC [H]

Synonym: MAB_2290

Alternate gene names: 169629376

Gene position: 2338526-2339161 (Clockwise)

Preceding gene: 169629375

Following gene: 169629377

Centisome position: 46.15

GC content: 59.59

Gene sequence:

>636_bases
ATGAGCGAATCCAAGCCGGGTCGCCGCGAGCGGTATGCCGCGCTGACACGCTCGGCCATCGTCGAGGCCGCCAGAATGCT
GTTCGTCGAGCGCGGATTCGATGACACCTCGGTGGACGACATCGCCGAGGCGGCCCAGGTGAGTAAGGGTGCCATCTACC
ACCATTTCAAAGACAAGCAAGAGATATTCATCGATGTTTACCGCGATGCCACCAAAGGGGTCATCGAGAACGTTGTCAAG
GTTCTCATCGATGTACCTGCCGGATCGTGGAATCGGATCGAAGCTGCGGCCAGTGCGGTGATCAAGGGGTATACCGACAA
TCGCGAGCCCCGAGTGCTCGTACGCCAAGTCATGGGCGTGCTGGGTGCCGAACGCACCCAGGCACTGGAAGGCGAGCTGG
CTCTGCCTCTCATCCGGACCCTGCTTACCGAGGCCGAAGAGAACGGCGAATTGAGGGACCTGTCGATCGAAAAGGCGTCC
CAACTGATTTTCCGCGTGCTGTGTGAATCGTCCCTATTGATCGCCAATTCCGCCGATTACGCCGAAGCGGCACAAGAGGT
GGAGACAGTAATGTTGTGCATGTTCGCCGGATTGCGTAAACCGCCTGCGGCCACCCGCGGGCGGCGTAAGAGCTAG

Upstream 100 bases:

>100_bases
CGGCACGCGGCGCCTCGGCTTCATGAGTGCGGTAGCCAACCCGCTTCTAGATACCGGGAGTCGATTACAAAATGGTGTTC
AGAGAGTAGTATCGAGGTCT

Downstream 100 bases:

>100_bases
CGGCGTCCCGTGGAAACCATCGAGGTACGACGCAGCATCGCCGCACCGATTGCCGATGTCTTCGACTGGATCAGCAATGC
CGAAAACTACACCGACTCAC

Product: transcriptional regulator TetR

Products: NA

Alternate protein names: ORFL [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSESKPGRRERYAALTRSAIVEAARMLFVERGFDDTSVDDIAEAAQVSKGAIYHHFKDKQEIFIDVYRDATKGVIENVVK
VLIDVPAGSWNRIEAAASAVIKGYTDNREPRVLVRQVMGVLGAERTQALEGELALPLIRTLLTEAEENGELRDLSIEKAS
QLIFRVLCESSLLIANSADYAEAAQEVETVMLCMFAGLRKPPAATRGRRKS

Sequences:

>Translated_211_residues
MSESKPGRRERYAALTRSAIVEAARMLFVERGFDDTSVDDIAEAAQVSKGAIYHHFKDKQEIFIDVYRDATKGVIENVVK
VLIDVPAGSWNRIEAAASAVIKGYTDNREPRVLVRQVMGVLGAERTQALEGELALPLIRTLLTEAEENGELRDLSIEKAS
QLIFRVLCESSLLIANSADYAEAAQEVETVMLCMFAGLRKPPAATRGRRKS
>Mature_210_residues
SESKPGRRERYAALTRSAIVEAARMLFVERGFDDTSVDDIAEAAQVSKGAIYHHFKDKQEIFIDVYRDATKGVIENVVKV
LIDVPAGSWNRIEAAASAVIKGYTDNREPRVLVRQVMGVLGAERTQALEGELALPLIRTLLTEAEENGELRDLSIEKASQ
LIFRVLCESSLLIANSADYAEAAQEVETVMLCMFAGLRKPPAATRGRRKS

Specific function: Potential Regulator Protein For The Acrab Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23311; Mature: 23180

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESKPGRRERYAALTRSAIVEAARMLFVERGFDDTSVDDIAEAAQVSKGAIYHHFKDKQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCHH
EIFIDVYRDATKGVIENVVKVLIDVPAGSWNRIEAAASAVIKGYTDNREPRVLVRQVMGV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LGAERTQALEGELALPLIRTLLTEAEENGELRDLSIEKASQLIFRVLCESSLLIANSADY
HCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHH
AEAAQEVETVMLCMFAGLRKPPAATRGRRKS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SESKPGRRERYAALTRSAIVEAARMLFVERGFDDTSVDDIAEAAQVSKGAIYHHFKDKQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCHH
EIFIDVYRDATKGVIENVVKVLIDVPAGSWNRIEAAASAVIKGYTDNREPRVLVRQVMGV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LGAERTQALEGELALPLIRTLLTEAEENGELRDLSIEKASQLIFRVLCESSLLIANSADY
HCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHH
AEAAQEVETVMLCMFAGLRKPPAATRGRRKS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6094471; 6094472 [H]