| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is idsA [H]
Identifier: 169629079
GI number: 169629079
Start: 1989584
End: 1990528
Strand: Reverse
Name: idsA [H]
Synonym: MAB_1992c
Alternate gene names: 169629079
Gene position: 1990528-1989584 (Counterclockwise)
Preceding gene: 169629081
Following gene: 169629078
Centisome position: 39.28
GC content: 65.93
Gene sequence:
>945_bases GTGCTGCGCGGCGGTAAGAGGCTGCGCCCGGCATTCGCCTACTGGGGCTGGCGCGCGATCACCGACGACCCAGACCCGTG GAACCCCGAAGTTCTCCGGGTATGTGCCGCGCTGGAACTTCTCCACACCTGCGCGCTCATCCACGATGACGTCATCGACA GCTCCGCGACCAGGCGGGGCGAACCGACCATCCACGTGGAGTTCGCCGCGCTGCACCGCGAGAATGGCTGGTCGGGCTCC CCTGAGCAGTTCGGGATATCGGCCGCGATCCTCCTCGGCGACCTGGCGCTCACGTGGGCCGACGACATGGTGGTCGGCGC ACAGCTCTCGCCCGAAGCGCACGTGCGGGCGCGTGGTGTCTGGTCGATCCTGCGCAGCGAGGTGCTCGGCGGCCAATATC TGGACATCCTGTCCGAATCTTCCGGTGACGAATCCGTCGAAACCGCCCTGCGGGTAATCCGATTCAAGACCGCCGGGTAC ACGGTGCAGCGACCGTTGCAGCTCGGTGTCGCGATCGCAGGCGAGAATGCGGAAATCTCACGTCTCCTCGGCGATGTCGG GCTCGATATCGGCATCGCGTTCCAGCTGCGCGATGACGTCCTCGGCGTGTTCGGGGATCCGAAGGTGACCGGAAAACCCG CCGGAGATGATCTGCGCTCCGGAAAGCGCACCGTACTCCTGGCCGAAGCCCTCCGGTTGGCCCGCCAGCGCGACAGCGCC GCCGAGGATCTGCTGCATTCCTGGATCGGTACCCCGCTCACCGACCAGCAGGTTGCCGAGATGTGTTCACTCATAGTCGA CTTGGGCGCGCTCGGGGCGGTGGAATCTCGCATCGAGGAACACACGCATCGCGCCCTGGACCAGTTGGCGGGCGCAGATA TTGCCGACGATGCCCGCGCCGCACTATCAGACCTGGTCCGATTGGTGTCCAACCGGAGCGCATGA
Upstream 100 bases:
>100_bases GGTAAGCGACCAATTAAGCCAGTTCCTGGCCGAATGCCGCGAGCACACCGCGCACATCGGGCAGCACTATGAGCACGCCA TCACCGCCCTGGACCGGTTT
Downstream 100 bases:
>100_bases TCACGTGAGTACATCGTCAAAGGCCTTGGAGCCTTCCCAAGAACCAAAACCAGATCCCGACAGTCCGGCGCCCGCACCGG CCCCCGGATGGGTGTCCTCG
Product: polyprenyl synthetase
Products: NA
Alternate protein names: (2E,6E)-farnesyl diphosphate synthase; Dimethylallyltranstransferase; Farnesyl diphosphate synthase; Farnesyl pyrophosphate synthase; FPP synthase; Geranyltranstransferase [H]
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MLRGGKRLRPAFAYWGWRAITDDPDPWNPEVLRVCAALELLHTCALIHDDVIDSSATRRGEPTIHVEFAALHRENGWSGS PEQFGISAAILLGDLALTWADDMVVGAQLSPEAHVRARGVWSILRSEVLGGQYLDILSESSGDESVETALRVIRFKTAGY TVQRPLQLGVAIAGENAEISRLLGDVGLDIGIAFQLRDDVLGVFGDPKVTGKPAGDDLRSGKRTVLLAEALRLARQRDSA AEDLLHSWIGTPLTDQQVAEMCSLIVDLGALGAVESRIEEHTHRALDQLAGADIADDARAALSDLVRLVSNRSA
Sequences:
>Translated_314_residues MLRGGKRLRPAFAYWGWRAITDDPDPWNPEVLRVCAALELLHTCALIHDDVIDSSATRRGEPTIHVEFAALHRENGWSGS PEQFGISAAILLGDLALTWADDMVVGAQLSPEAHVRARGVWSILRSEVLGGQYLDILSESSGDESVETALRVIRFKTAGY TVQRPLQLGVAIAGENAEISRLLGDVGLDIGIAFQLRDDVLGVFGDPKVTGKPAGDDLRSGKRTVLLAEALRLARQRDSA AEDLLHSWIGTPLTDQQVAEMCSLIVDLGALGAVESRIEEHTHRALDQLAGADIADDARAALSDLVRLVSNRSA >Mature_314_residues MLRGGKRLRPAFAYWGWRAITDDPDPWNPEVLRVCAALELLHTCALIHDDVIDSSATRRGEPTIHVEFAALHRENGWSGS PEQFGISAAILLGDLALTWADDMVVGAQLSPEAHVRARGVWSILRSEVLGGQYLDILSESSGDESVETALRVIRFKTAGY TVQRPLQLGVAIAGENAEISRLLGDVGLDIGIAFQLRDDVLGVFGDPKVTGKPAGDDLRSGKRTVLLAEALRLARQRDSA AEDLLHSWIGTPLTDQQVAEMCSLIVDLGALGAVESRIEEHTHRALDQLAGADIADDARAALSDLVRLVSNRSA
Specific function: Supplies Octaprenyl Diphosphate, The Precursor For The Side Chain Of The Isoprenoid Quinones Ubiquinone And Menaquinone. [C]
COG id: COG0142
COG function: function code H; Geranylgeranyl pyrophosphate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FPP/GGPP synthase family [H]
Homologues:
Organism=Escherichia coli, GI1789578, Length=229, Percent_Identity=31.4410480349345, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786623, Length=253, Percent_Identity=32.0158102766798, Blast_Score=71, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17508563, Length=328, Percent_Identity=28.0487804878049, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24651612, Length=230, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000092 - InterPro: IPR017446 - InterPro: IPR008949 [H]
Pfam domain/function: PF00348 polyprenyl_synt [H]
EC number: =2.5.1.1; =2.5.1.10 [H]
Molecular weight: Translated: 33919; Mature: 33919
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS00723 POLYPRENYL_SYNTHET_1 ; PS00444 POLYPRENYL_SYNTHET_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRGGKRLRPAFAYWGWRAITDDPDPWNPEVLRVCAALELLHTCALIHDDVIDSSATRRG CCCCCCCCCHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EPTIHVEFAALHRENGWSGSPEQFGISAAILLGDLALTWADDMVVGAQLSPEAHVRARGV CCEEEEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHH WSILRSEVLGGQYLDILSESSGDESVETALRVIRFKTAGYTVQRPLQLGVAIAGENAEIS HHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECHHHCCEEEECCCHHHH RLLGDVGLDIGIAFQLRDDVLGVFGDPKVTGKPAGDDLRSGKRTVLLAEALRLARQRDSA HHHHHHCCCEEEEEEECCCHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCHH AEDLLHSWIGTPLTDQQVAEMCSLIVDLGALGAVESRIEEHTHRALDQLAGADIADDARA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH ALSDLVRLVSNRSA HHHHHHHHHHCCCC >Mature Secondary Structure MLRGGKRLRPAFAYWGWRAITDDPDPWNPEVLRVCAALELLHTCALIHDDVIDSSATRRG CCCCCCCCCHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EPTIHVEFAALHRENGWSGSPEQFGISAAILLGDLALTWADDMVVGAQLSPEAHVRARGV CCEEEEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHH WSILRSEVLGGQYLDILSESSGDESVETALRVIRFKTAGYTVQRPLQLGVAIAGENAEIS HHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECHHHCCEEEECCCHHHH RLLGDVGLDIGIAFQLRDDVLGVFGDPKVTGKPAGDDLRSGKRTVLLAEALRLARQRDSA HHHHHHCCCEEEEEEECCCHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCHH AEDLLHSWIGTPLTDQQVAEMCSLIVDLGALGAVESRIEEHTHRALDQLAGADIADDARA HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH ALSDLVRLVSNRSA HHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]