| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is 169628991
Identifier: 169628991
GI number: 169628991
Start: 1900164
End: 1901303
Strand: Direct
Name: 169628991
Synonym: MAB_1903
Alternate gene names: NA
Gene position: 1900164-1901303 (Clockwise)
Preceding gene: 169628990
Following gene: 169628992
Centisome position: 37.5
GC content: 67.89
Gene sequence:
>1140_bases GTGGGTGTGCGGCTCGCGGACATCATCGGCGTGCTCGACGCGGCCTATCCGCCGGCGCTGGCCGAATCGTGGGATTCGGT GGGCTTGGTCTGCGGCGACCCGGATCAGCAGATCGACACCGTGACGGTTGCCGTTGATGCAACTGCCGCGGTGGTGGACG AAATGGACGGCCCCGGTGCGCATCTGCTGCTGGCTCATCACCCCTTGCTGCTGCGCGGCGTGGACACGGTGGCGGCCAGC ACGCCCAAGGGCGCGCTGGTTCATCGTCTCATCCGTGCGGGCGGCGCGCTGTTCACCGCGCATACCAACGCGGACTCGGC CAGCCCTGGTGTGTCGGACGCGCTGGCGCAAGCCCTCGGGCTGACGGTCACCTCGGTGTTGGCCCCTCGGTTCACCGACT ACGACAAGTGGGTCGTGTTCGTGCCCACCGAATCTGTGCACGCCGTGCGGCGGGCCATGTTCGAGGCCGGTGCCGGACAT ATCGGTGCCTACTCGGATTGTTCATGGAGTGTCACCGGCACCGGCCAATTCCGGCCGTTGGCGGGCTCCGATCCCGCTGT AGGGGAGCATGGTGTGGTGGAACAGGTCGTCGAGGACCGCGTGGAGATGGTTGCCCCGTCGCGGCTGCGTTGCGAGCTTT TTGCGGCGATTCAGGCCGCCCACCCCTACGAGGTTCCGGCCATCGACGTGCTGCCCATGGCGCCGGCGCCGTCCGGCACC GGCCTGGGGCGGATAGGCGCCCTACCCACGCCGGAGACCTTGCGCGACTTCGTATCCCGTGTTCGAGGTGCCTTGCCTGA GACTGTGTGGGGGGTGCGGGCCGCTGGCGACCCCGACGAGTTGATCCAGACCGTCGCGGTCTGCGGTGGCGCCGGTGACT CGCTGCTGGGCGCGGCGGTCAAGTCGGGAGCGGACGTCTACGTCACCGCCGATCTGCGGCACCATCCGGCGGACGAACAT GCCCGGACAAGTAGCGTCGCACTCGTCGACGTCGCGCATTGGGCCAGTGAATTCCCATGGTGCGCGCAGGCGGCGCGCGT ACTCGACACCGAGTTCGGGGAGAATCTGTCGACGCGCATCTCACCGGTACGCACCGATCCCTGGACGCTGGGCGGCCCAG AGAAAGAAGAAAAAGCATGA
Upstream 100 bases:
>100_bases GGCGTTGCGACACCTTTGTCGGGCTGGACGGCGACTACCTACGGGTGGCGGTGCGACCGGAATGGCCGGAGCTGGTGCAA GCGATGAAGGAGATCTTGTA
Downstream 100 bases:
>100_bases AAGCCGATGTGGCACAACAACGCCTATTAGTGGATCTGGCGTCGGTGGATGCCGAGTTGACACGTGTCGCGCACCGGCGC GCAAACCCGCCCGAACGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MGVRLADIIGVLDAAYPPALAESWDSVGLVCGDPDQQIDTVTVAVDATAAVVDEMDGPGAHLLLAHHPLLLRGVDTVAAS TPKGALVHRLIRAGGALFTAHTNADSASPGVSDALAQALGLTVTSVLAPRFTDYDKWVVFVPTESVHAVRRAMFEAGAGH IGAYSDCSWSVTGTGQFRPLAGSDPAVGEHGVVEQVVEDRVEMVAPSRLRCELFAAIQAAHPYEVPAIDVLPMAPAPSGT GLGRIGALPTPETLRDFVSRVRGALPETVWGVRAAGDPDELIQTVAVCGGAGDSLLGAAVKSGADVYVTADLRHHPADEH ARTSSVALVDVAHWASEFPWCAQAARVLDTEFGENLSTRISPVRTDPWTLGGPEKEEKA
Sequences:
>Translated_379_residues MGVRLADIIGVLDAAYPPALAESWDSVGLVCGDPDQQIDTVTVAVDATAAVVDEMDGPGAHLLLAHHPLLLRGVDTVAAS TPKGALVHRLIRAGGALFTAHTNADSASPGVSDALAQALGLTVTSVLAPRFTDYDKWVVFVPTESVHAVRRAMFEAGAGH IGAYSDCSWSVTGTGQFRPLAGSDPAVGEHGVVEQVVEDRVEMVAPSRLRCELFAAIQAAHPYEVPAIDVLPMAPAPSGT GLGRIGALPTPETLRDFVSRVRGALPETVWGVRAAGDPDELIQTVAVCGGAGDSLLGAAVKSGADVYVTADLRHHPADEH ARTSSVALVDVAHWASEFPWCAQAARVLDTEFGENLSTRISPVRTDPWTLGGPEKEEKA >Mature_378_residues GVRLADIIGVLDAAYPPALAESWDSVGLVCGDPDQQIDTVTVAVDATAAVVDEMDGPGAHLLLAHHPLLLRGVDTVAAST PKGALVHRLIRAGGALFTAHTNADSASPGVSDALAQALGLTVTSVLAPRFTDYDKWVVFVPTESVHAVRRAMFEAGAGHI GAYSDCSWSVTGTGQFRPLAGSDPAVGEHGVVEQVVEDRVEMVAPSRLRCELFAAIQAAHPYEVPAIDVLPMAPAPSGTG LGRIGALPTPETLRDFVSRVRGALPETVWGVRAAGDPDELIQTVAVCGGAGDSLLGAAVKSGADVYVTADLRHHPADEHA RTSSVALVDVAHWASEFPWCAQAARVLDTEFGENLSTRISPVRTDPWTLGGPEKEEKA
Specific function: Unknown
COG id: COG0327
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0135 (NIF3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002678 - InterPro: IPR017221 [H]
Pfam domain/function: PF01784 NIF3 [H]
EC number: NA
Molecular weight: Translated: 39539; Mature: 39408
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVRLADIIGVLDAAYPPALAESWDSVGLVCGDPDQQIDTVTVAVDATAAVVDEMDGPGA CCCHHHHHHHHHHCCCCCHHHHCCCCCEEEECCCCCCEEEEEEEECHHHHHHHCCCCCCC HLLLAHHPLLLRGVDTVAASTPKGALVHRLIRAGGALFTAHTNADSASPGVSDALAQALG EEEEECCCCCEECHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHH LTVTSVLAPRFTDYDKWVVFVPTESVHAVRRAMFEAGAGHIGAYSDCSWSVTGTGQFRPL HHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCC AGSDPAVGEHGVVEQVVEDRVEMVAPSRLRCELFAAIQAAHPYEVPAIDVLPMAPAPSGT CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC GLGRIGALPTPETLRDFVSRVRGALPETVWGVRAAGDPDELIQTVAVCGGAGDSLLGAAV CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH KSGADVYVTADLRHHPADEHARTSSVALVDVAHWASEFPWCAQAARVLDTEFGENLSTRI HCCCCEEEEECCCCCCCCHHHCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCHHCC SPVRTDPWTLGGPEKEEKA CCCCCCCCCCCCCCHHCCC >Mature Secondary Structure GVRLADIIGVLDAAYPPALAESWDSVGLVCGDPDQQIDTVTVAVDATAAVVDEMDGPGA CCHHHHHHHHHHCCCCCHHHHCCCCCEEEECCCCCCEEEEEEEECHHHHHHHCCCCCCC HLLLAHHPLLLRGVDTVAASTPKGALVHRLIRAGGALFTAHTNADSASPGVSDALAQALG EEEEECCCCCEECHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHH LTVTSVLAPRFTDYDKWVVFVPTESVHAVRRAMFEAGAGHIGAYSDCSWSVTGTGQFRPL HHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCC AGSDPAVGEHGVVEQVVEDRVEMVAPSRLRCELFAAIQAAHPYEVPAIDVLPMAPAPSGT CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC GLGRIGALPTPETLRDFVSRVRGALPETVWGVRAAGDPDELIQTVAVCGGAGDSLLGAAV CCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH KSGADVYVTADLRHHPADEHARTSSVALVDVAHWASEFPWCAQAARVLDTEFGENLSTRI HCCCCEEEEECCCCCCCCHHHCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCHHCC SPVRTDPWTLGGPEKEEKA CCCCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]