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The map label for this gene is tnpR [H]

Identifier: 169628909

GI number: 169628909

Start: 1819847

End: 1820461

Strand: Reverse

Name: tnpR [H]

Synonym: MAB_1820c

Alternate gene names: 169628909

Gene position: 1820461-1819847 (Counterclockwise)

Preceding gene: 169628912

Following gene: 169628908

Centisome position: 35.93

GC content: 62.44

Gene sequence:

>615_bases
ATGGACACATCGACGACGGCCGACACTGGTGTACTGCTGGGCTACGCGCGAGTGTCCACCGCTCATCAGTCCCTGGACCA
GCAACTCGACGCACTGACCGAAGCCGGAGTCGGGCCCGACCGCATCTACAAAGACAAACTGTCGGGGACCTCCACACGTG
AGCAGCGTCCAGGTCTTGCCGCCCTACTGGATTACGCCCGCCCCGGCGACGGCATCGTCGTCGTTGGCATCGATCGCCTT
GGTAGGAATGCAGCGGAGGTGATGGCCACCATCCGCGACCTAGCCGAGCGGGAAATCGTGTTGCATTCTCTCCGTGAAGG
CATCGACAGCTCAAATGCAACCGGCCGCATGATCGCTGGGGTGCTAGCGAGCCTTGCTGAGCTCGAGCTCGAGCTTGGTC
GAGAGCGCCGAGCTGCGGCACGAGAGTCCCGTCGGGCGCGGGGCCAGCACATCGGTCGACCAAAAGCTCTTGACAACGCA
AAGGCTGCATTGGCGCAACGTATGCACCTAGCAGGCGAGCCCGTACTGACAATCGCGAACACACTCGGTGTGAGCCGGGC
AACGGTCTATCGGGTGCTGGCCGAGGATCTTCACGCAGGTAAGGAGGACCAATGA

Upstream 100 bases:

>100_bases
AGCAGCGCAAATACACCGAGGTCAAGCTGTCGCAAAACTCGCCTCAAAACAATGGTCGCAAAACCTTGCATGTGCGATAG
ATTTGAGACAGGCTTGGAAA

Downstream 100 bases:

>100_bases
GCCGGCCGACGGAATTGTCGACAGACGAAGTTGACGGGTTGATAGCGATCGGGCTAGCCCACGATTTCTGGCGCGGCCAG
TGGTCAACCGTCGAAGAGGC

Product: putative resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MDTSTTADTGVLLGYARVSTAHQSLDQQLDALTEAGVGPDRIYKDKLSGTSTREQRPGLAALLDYARPGDGIVVVGIDRL
GRNAAEVMATIRDLAEREIVLHSLREGIDSSNATGRMIAGVLASLAELELELGRERRAAARESRRARGQHIGRPKALDNA
KAALAQRMHLAGEPVLTIANTLGVSRATVYRVLAEDLHAGKEDQ

Sequences:

>Translated_204_residues
MDTSTTADTGVLLGYARVSTAHQSLDQQLDALTEAGVGPDRIYKDKLSGTSTREQRPGLAALLDYARPGDGIVVVGIDRL
GRNAAEVMATIRDLAEREIVLHSLREGIDSSNATGRMIAGVLASLAELELELGRERRAAARESRRARGQHIGRPKALDNA
KAALAQRMHLAGEPVLTIANTLGVSRATVYRVLAEDLHAGKEDQ
>Mature_204_residues
MDTSTTADTGVLLGYARVSTAHQSLDQQLDALTEAGVGPDRIYKDKLSGTSTREQRPGLAALLDYARPGDGIVVVGIDRL
GRNAAEVMATIRDLAEREIVLHSLREGIDSSNATGRMIAGVLASLAELELELGRERRAAARESRRARGQHIGRPKALDNA
KAALAQRMHLAGEPVLTIANTLGVSRATVYRVLAEDLHAGKEDQ

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=181, Percent_Identity=40.3314917127072, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1787827, Length=188, Percent_Identity=32.9787234042553, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1787638, Length=187, Percent_Identity=31.5508021390374, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 21841; Mature: 21841

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00397 RECOMBINASES_1 ; PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTSTTADTGVLLGYARVSTAHQSLDQQLDALTEAGVGPDRIYKDKLSGTSTREQRPGLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHCCCHH
ALLDYARPGDGIVVVGIDRLGRNAAEVMATIRDLAEREIVLHSLREGIDSSNATGRMIAG
HHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
VLASLAELELELGRERRAAARESRRARGQHIGRPKALDNAKAALAQRMHLAGEPVLTIAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
TLGVSRATVYRVLAEDLHAGKEDQ
HHCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDTSTTADTGVLLGYARVSTAHQSLDQQLDALTEAGVGPDRIYKDKLSGTSTREQRPGLA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHCCCHH
ALLDYARPGDGIVVVGIDRLGRNAAEVMATIRDLAEREIVLHSLREGIDSSNATGRMIAG
HHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
VLASLAELELELGRERRAAARESRRARGQHIGRPKALDNAKAALAQRMHLAGEPVLTIAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
TLGVSRATVYRVLAEDLHAGKEDQ
HHCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2170815; 2555186 [H]