Click here to switch to the map view.

The map label for this gene is rpiB [H]

Identifier: 169628664

GI number: 169628664

Start: 1604564

End: 1605043

Strand: Direct

Name: rpiB [H]

Synonym: MAB_1574

Alternate gene names: 169628664

Gene position: 1604564-1605043 (Clockwise)

Preceding gene: 169628662

Following gene: 169628665

Centisome position: 31.67

GC content: 68.33

Gene sequence:

>480_bases
ATGCGCGTCTATGTGGGAGCCGATCACGCCGGTTACGAGTTGAAGCAGAAGATCATCGAGCATCTTCGGGGCCGGGGTCA
CGAGCCGGTGGATTGCGGGGCCTTTGAGCTGGACCCGCAGGACGATTACCCCGCGTTCTGCATCGACGCCGCCCGGCGCA
CGGTCGCCGACCCGGGCAGCCTCGGCATCGTGTTGGGCGGTTCGGGCAATGGTGAGCAGATTGCCGCCAACAAGGTTCCG
GGCGCGCGCTGCGCACTGGCGTGGAGCCTGGAGACCGCGGTGCTGGCCCGTGAGCACAACAACGCACAGCTGATCGGGAT
CGGCGGCCGCATGCACACGGTGCCGGAAGCGCTTGCCATCGTCGACGCGTTCCTGGCCGCCAAGTGGTCGGAGGAGCCGC
GGCACCAGCGCCGCATCGACATCCTGGCCGAGTACGAGACCACGCGCGTGGCGCCGCCGGTACCTGGCGCCAGCTCGTAA

Upstream 100 bases:

>100_bases
GCGGGGGATAGGTGTACTGGGGCAGTCCGACCGGGTACATGCGCGCCACGGTAACCGACCGCGGGGCAACCTGGCGCAAC
GCGACTGTCACAATTGGGGC

Downstream 100 bases:

>100_bases
ACGCCTGTGCCGGAGGGTCATACCCTGCACCGGCTGGCCCGGTTGCACCAGCGCCGGTTCGCCGGTGCGCCGGTGTCGGT
GAGCAGCCCGCAGGGACGGT

Product: ribose-5-phosphate isomerase B

Products: NA

Alternate protein names: Phosphoriboisomerase B [H]

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MRVYVGADHAGYELKQKIIEHLRGRGHEPVDCGAFELDPQDDYPAFCIDAARRTVADPGSLGIVLGGSGNGEQIAANKVP
GARCALAWSLETAVLAREHNNAQLIGIGGRMHTVPEALAIVDAFLAAKWSEEPRHQRRIDILAEYETTRVAPPVPGASS

Sequences:

>Translated_159_residues
MRVYVGADHAGYELKQKIIEHLRGRGHEPVDCGAFELDPQDDYPAFCIDAARRTVADPGSLGIVLGGSGNGEQIAANKVP
GARCALAWSLETAVLAREHNNAQLIGIGGRMHTVPEALAIVDAFLAAKWSEEPRHQRRIDILAEYETTRVAPPVPGASS
>Mature_159_residues
MRVYVGADHAGYELKQKIIEHLRGRGHEPVDCGAFELDPQDDYPAFCIDAARRTVADPGSLGIVLGGSGNGEQIAANKVP
GARCALAWSLETAVLAREHNNAQLIGIGGRMHTVPEALAIVDAFLAAKWSEEPRHQRRIDILAEYETTRVAPPVPGASS

Specific function: In Addition To Its Activity On D-Ribose 5-Phosphate It Probably Also Has Activity On D-Allose 6-Phosphate. [C]

COG id: COG0698

COG function: function code G; Ribose 5-phosphate isomerase RpiB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lacAB/rpiB family [H]

Homologues:

Organism=Escherichia coli, GI1790528, Length=148, Percent_Identity=34.4594594594595, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011860
- InterPro:   IPR003500 [H]

Pfam domain/function: PF02502 LacAB_rpiB [H]

EC number: =5.3.1.6 [H]

Molecular weight: Translated: 17075; Mature: 17075

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVYVGADHAGYELKQKIIEHLRGRGHEPVDCGAFELDPQDDYPAFCIDAARRTVADPGS
CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCC
LGIVLGGSGNGEQIAANKVPGARCALAWSLETAVLAREHNNAQLIGIGGRMHTVPEALAI
EEEEECCCCCCCEEEECCCCCCEEEEEECHHHHEEEECCCCEEEEEECCCCHHHHHHHHH
VDAFLAAKWSEEPRHQRRIDILAEYETTRVAPPVPGASS
HHHHHHHHCCCCCCHHHHEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRVYVGADHAGYELKQKIIEHLRGRGHEPVDCGAFELDPQDDYPAFCIDAARRTVADPGS
CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCC
LGIVLGGSGNGEQIAANKVPGARCALAWSLETAVLAREHNNAQLIGIGGRMHTVPEALAI
EEEEECCCCCCCEEEECCCCCCEEEEEECHHHHEEEECCCCEEEEEECCCCHHHHHHHHH
VDAFLAAKWSEEPRHQRRIDILAEYETTRVAPPVPGASS
HHHHHHHHCCCCCCHHHHEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]