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The map label for this gene is fadR [H]

Identifier: 169628616

GI number: 169628616

Start: 1545441

End: 1546067

Strand: Reverse

Name: fadR [H]

Synonym: MAB_1525c

Alternate gene names: 169628616

Gene position: 1546067-1545441 (Counterclockwise)

Preceding gene: 169628619

Following gene: 169628615

Centisome position: 30.51

GC content: 62.04

Gene sequence:

>627_bases
ATGTCGTCCAGCCCGTCCGCACTCAGCCGTGTCGAGCGCAAAAAGCGCGAAATGCGGCAGGAGATCTTGGACTCCGCCTT
CGCATGCTTCGCCGAGCAGGGCTATCACGCCACAGGCGTCGCGGATATCGCCGGACGAATCGGGATCGGCCACGGGACCT
TCTACCGGTACTTCAAGAGCAAGCGGGACATCATCGAGCATGTCATTGACGACGTCACCGGACAGATCTTTGAGGCAATC
GGCGCAGAGAACGCGGCAGGCCTCGCCGACGACATTGAGCAATACCGACAACAGTCGGTCCGGATCGGCGCCGCTCTGGC
GCACCTGTTCAGGGAAAACCCGCACCTACCGCTGCTGCTTCTGGAAGCCGGCTCGGTCGACAGTGAGCTGCGCGAGCGCG
TGTTCGGCATGCTCTCCACAAGCGATCATCTCACCGAGGCCTACCTGCGCCATGGTGTCGAAAAAGGCTACCTACGTGCC
GATCTCGACACCGAATACACCGCTCGCGCGGTAACCGGGATGATTCTCGCCAACGGGCTGCACGCGTCACGAGGCGGCGA
GGTACAAGACACCGAGCGATTCTCGGCGGCCGTCATCGCTCTGATGTACGGCGGAATAGGCCCCTAA

Upstream 100 bases:

>100_bases
ATAACGACTCACATCTACCTCCAGGAAAACGGAATGGCGTGTCAGTTTCGGAATGATATGTCATTCTTGAGGGGTGTCAA
GGTCGGTAGGATCGCCGCTT

Downstream 100 bases:

>100_bases
CCACCCAACTCGAGACACCTGCGGACGGCCGCAACGGTTACCCCCTAATCTTGCTGTCATGGCCGCAGTGAGCAAGGTGT
TCGCAGCCAGGCTCTCAGGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MSSSPSALSRVERKKREMRQEILDSAFACFAEQGYHATGVADIAGRIGIGHGTFYRYFKSKRDIIEHVIDDVTGQIFEAI
GAENAAGLADDIEQYRQQSVRIGAALAHLFRENPHLPLLLLEAGSVDSELRERVFGMLSTSDHLTEAYLRHGVEKGYLRA
DLDTEYTARAVTGMILANGLHASRGGEVQDTERFSAAVIALMYGGIGP

Sequences:

>Translated_208_residues
MSSSPSALSRVERKKREMRQEILDSAFACFAEQGYHATGVADIAGRIGIGHGTFYRYFKSKRDIIEHVIDDVTGQIFEAI
GAENAAGLADDIEQYRQQSVRIGAALAHLFRENPHLPLLLLEAGSVDSELRERVFGMLSTSDHLTEAYLRHGVEKGYLRA
DLDTEYTARAVTGMILANGLHASRGGEVQDTERFSAAVIALMYGGIGP
>Mature_207_residues
SSSPSALSRVERKKREMRQEILDSAFACFAEQGYHATGVADIAGRIGIGHGTFYRYFKSKRDIIEHVIDDVTGQIFEAIG
AENAAGLADDIEQYRQQSVRIGAALAHLFRENPHLPLLLLEAGSVDSELRERVFGMLSTSDHLTEAYLRHGVEKGYLRAD
LDTEYTARAVTGMILANGLHASRGGEVQDTERFSAAVIALMYGGIGP

Specific function: Transcriptional regulator in fatty acid degradation. Represses transcription of genes required for fatty acid transport and beta-oxidation, including acdA, fadA, fadB, fadE, fadF, fadG, fadH, fadM, fadN, lcfA and lcfB. Binding of FadR to DNA is specifical

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR013570 [H]

Pfam domain/function: PF08359 TetR_C_4; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22786; Mature: 22655

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSPSALSRVERKKREMRQEILDSAFACFAEQGYHATGVADIAGRIGIGHGTFYRYFKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHH
KRDIIEHVIDDVTGQIFEAIGAENAAGLADDIEQYRQQSVRIGAALAHLFRENPHLPLLL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LEAGSVDSELRERVFGMLSTSDHLTEAYLRHGVEKGYLRADLDTEYTARAVTGMILANGL
EECCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCC
HASRGGEVQDTERFSAAVIALMYGGIGP
CCCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSSPSALSRVERKKREMRQEILDSAFACFAEQGYHATGVADIAGRIGIGHGTFYRYFKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHH
KRDIIEHVIDDVTGQIFEAIGAENAAGLADDIEQYRQQSVRIGAALAHLFRENPHLPLLL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
LEAGSVDSELRERVFGMLSTSDHLTEAYLRHGVEKGYLRADLDTEYTARAVTGMILANGL
EECCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCC
HASRGGEVQDTERFSAAVIALMYGGIGP
CCCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]