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The map label for this gene is yrdC [C]

Identifier: 169628535

GI number: 169628535

Start: 1449159

End: 1449839

Strand: Direct

Name: yrdC [C]

Synonym: MAB_1444

Alternate gene names: 169628535

Gene position: 1449159-1449839 (Clockwise)

Preceding gene: 169628534

Following gene: 169628536

Centisome position: 28.6

GC content: 67.84

Gene sequence:

>681_bases
GTGACCGTCGTCTACGACTGCCAAGACGCTGCGACCCGCCAGAGCGGGATCGACGCGGCGGTGAGTGCGCTCAAGGCGGG
CGAGCTGGTGGTGATGCCCACCGATACGGTCTATGGATTGGGTTGTGACGCATTCGATTCCGGTGCGGTGACGGCGCTGT
TGGCCGCCAAAGGGCGCGGCCGGGACATGCCGGTCGGCGTGCTTGTGGGCTCGTGGCACACCATCGACGGCCTGGTGTTC
GCGGTCCCGGCTGCCGCTCGTGAACTTATCGAGGCATTCTGGCCGGGACCGCTCAGCATCATCGTGAGGCACGCCCCTTC
GCTGTCCTGGGACCTGGGCGATGCCCAGGGGAGCGTCATGCTGCGAATGCCCATGCATCCGGTGGCCATCGAACTGCTGC
GCGCCGTCGGTCCGATGGCGGTTTCCAGCGCCAACGTGTCGGGCCGGCCCGCGGCGCTCACCGCCGCCGAAGCGCGCGGT
CAGTTGGACGACAAGGTTGCGGTGTATCTGGACGGCGGACAGGCCGAGCTGGGTGCGGCTTCGACCATCGTCGATCTCAC
CGGCCCGGCGCCGGTGATCGTGCGGGAAGGTCCGATCAGTCGGGAGCAGATCGTGGAGGTGATCGGCGGCCAAGTCGGAC
CTGTTGAGTCGGGCGAGTCGGGGGAGCCCACAGAATCGTGA

Upstream 100 bases:

>100_bases
CTGTGACTTTTTCGATGAGGTTGTGCAGCGGCACGACCTGACCGGACGGCCACGATTCGTCACCGCTCGCCGGAAAATCG
CGGCGTCCTAGACTGGGCGG

Downstream 100 bases:

>100_bases
AGTACGGTCGGACGCGTGAGTGAGCTGCTGGCCCTTGCCGATCGCGGCGCGGGCGTCCCGTTGCGGGAACTTGCGCTGGT
CGGCTTGACGGCAGCCATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MTVVYDCQDAATRQSGIDAAVSALKAGELVVMPTDTVYGLGCDAFDSGAVTALLAAKGRGRDMPVGVLVGSWHTIDGLVF
AVPAAARELIEAFWPGPLSIIVRHAPSLSWDLGDAQGSVMLRMPMHPVAIELLRAVGPMAVSSANVSGRPAALTAAEARG
QLDDKVAVYLDGGQAELGAASTIVDLTGPAPVIVREGPISREQIVEVIGGQVGPVESGESGEPTES

Sequences:

>Translated_226_residues
MTVVYDCQDAATRQSGIDAAVSALKAGELVVMPTDTVYGLGCDAFDSGAVTALLAAKGRGRDMPVGVLVGSWHTIDGLVF
AVPAAARELIEAFWPGPLSIIVRHAPSLSWDLGDAQGSVMLRMPMHPVAIELLRAVGPMAVSSANVSGRPAALTAAEARG
QLDDKVAVYLDGGQAELGAASTIVDLTGPAPVIVREGPISREQIVEVIGGQVGPVESGESGEPTES
>Mature_225_residues
TVVYDCQDAATRQSGIDAAVSALKAGELVVMPTDTVYGLGCDAFDSGAVTALLAAKGRGRDMPVGVLVGSWHTIDGLVFA
VPAAARELIEAFWPGPLSIIVRHAPSLSWDLGDAQGSVMLRMPMHPVAIELLRAVGPMAVSSANVSGRPAALTAAEARGQ
LDDKVAVYLDGGQAELGAASTIVDLTGPAPVIVREGPISREQIVEVIGGQVGPVESGESGEPTES

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=189, Percent_Identity=32.8042328042328, Blast_Score=74, Evalue=7e-14,
Organism=Escherichia coli, GI2367210, Length=155, Percent_Identity=30.3225806451613, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87081864, Length=195, Percent_Identity=29.2307692307692, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17537239, Length=197, Percent_Identity=29.9492385786802, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321269, Length=239, Percent_Identity=32.6359832635983, Blast_Score=107, Evalue=1e-24,
Organism=Drosophila melanogaster, GI78707274, Length=195, Percent_Identity=34.8717948717949, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23138; Mature: 23006

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVVYDCQDAATRQSGIDAAVSALKAGELVVMPTDTVYGLGCDAFDSGAVTALLAAKGRG
CEEEEECCHHHHHHCCHHHHHHHHCCCCEEEEECCCEEECCCCCCCCCCEEEEEECCCCC
RDMPVGVLVGSWHTIDGLVFAVPAAARELIEAFWPGPLSIIVRHAPSLSWDLGDAQGSVM
CCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHCCCHHHEEEECCCCCEEECCCCCCCEE
LRMPMHPVAIELLRAVGPMAVSSANVSGRPAALTAAEARGQLDDKVAVYLDGGQAELGAA
EEECCCHHHHHHHHHHCCCEEECCCCCCCCCEEEHHHHCCCCCCEEEEEEECCCCCCCCC
STIVDLTGPAPVIVREGPISREQIVEVIGGQVGPVESGESGEPTES
EEEEECCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TVVYDCQDAATRQSGIDAAVSALKAGELVVMPTDTVYGLGCDAFDSGAVTALLAAKGRG
EEEEECCHHHHHHCCHHHHHHHHCCCCEEEEECCCEEECCCCCCCCCCEEEEEECCCCC
RDMPVGVLVGSWHTIDGLVFAVPAAARELIEAFWPGPLSIIVRHAPSLSWDLGDAQGSVM
CCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHCCCHHHEEEECCCCCEEECCCCCCCEE
LRMPMHPVAIELLRAVGPMAVSSANVSGRPAALTAAEARGQLDDKVAVYLDGGQAELGAA
EEECCCHHHHHHHHHHCCCEEECCCCCCCCCEEEHHHHCCCCCCEEEEEEECCCCCCCCC
STIVDLTGPAPVIVREGPISREQIVEVIGGQVGPVESGESGEPTES
EEEEECCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]