Click here to switch to the map view.

The map label for this gene is ycjO [C]

Identifier: 169628464

GI number: 169628464

Start: 1370727

End: 1371629

Strand: Direct

Name: ycjO [C]

Synonym: MAB_1373

Alternate gene names: 169628464

Gene position: 1370727-1371629 (Clockwise)

Preceding gene: 169628463

Following gene: 169628465

Centisome position: 27.05

GC content: 62.24

Gene sequence:

>903_bases
GTGACCGACAGGACAAGCTCCGAGGGCAAGAGGGCCGAACGCCGGCTGGGGCTGCTACTCATCGCGCCGGCAGCGCTGCT
GATGTTGGCGGTCACCGCATATCCCATCTGCTACGCCATCTGGCTGAGCGTGCAGAAGTACAGCTTCGCCAGTCCGCAGG
ATCGCAAGTTCGTGTGGTTCGACAACTACATCACCGTCCTGAGCGACAGATATTGGTGGAGTGCCCTTGTCGTCACACTT
GTGATCACGGTGATTTCGGTGCTCATCGAGCTCGTGCTCGGGTTGGCCCTGGCGTTGGTGATGCACCGGACCATCTTCGG
GCGGGGCGTGGTGCGCACGGCGGTGCTGATCCCGTACGGCATCGTCACGGTGGCAGCGTCATACAGCTGGTACTACGCGT
GGACGCCGGGCACCGGTTACCTGGCGAATCTGCTGCCCGCGGGCAGCGCGCCACTGACGCAACAGATTCCGTCGCTTGCG
GTGGTGATCCTGGCCGAGGTGTGGAAGACCACGCCGTTCATGGCATTGCTGTTGCTGGCAGGTCTGGCGCTGGTGCCCGA
TGATCTGCTCAAGGCCGCCCAGGTCGACGGGGCCAATGGGTGGAGCAGGCTGATCCGCGTCACCGTGCCGATCATGAAGC
CCGCGATCCTGGTCGCGTTGCTGTTCCGTACCTTGGACGCCTTCCGCATCTTCGACAACATCTATGTGCTGACCGGTGGC
AGCAACAACACGGGATCGGTGTCGATTTTGGGATACGACAATCTGTTCAAGGCCTTCAACGTGGGGCTTGGCTCGGCCAT
CAGCGTGCTGATCTTCCTGTGTGTGGCCATCATCGCCGTCATCTTCATCAAGGGCTTCGGGGCTTCGGCGCCGACCACGG
ATGGCGAGGAGGCAAGACGGTGA

Upstream 100 bases:

>100_bases
CCGCCGTGTTGGCGCCGATCACCGGTATCGATCCCGAGCGCACGGCGGACCTGCTGAACGATCAGGTGCAGAAGGCCGTC
GACGGGCGGGGGCTGATCCC

Downstream 100 bases:

>100_bases
GCCGCCCCGATTCCTCGCGTACCGCCGGCTGGCTGATCGCCGATGTGCTGGTGCTGTGCTATGCACTGGTGCCGGTGCTG
TGGGTGCTCAGCCTGTCGCT

Product: sugar ABC transporter, permease protein SugA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTDRTSSEGKRAERRLGLLLIAPAALLMLAVTAYPICYAIWLSVQKYSFASPQDRKFVWFDNYITVLSDRYWWSALVVTL
VITVISVLIELVLGLALALVMHRTIFGRGVVRTAVLIPYGIVTVAASYSWYYAWTPGTGYLANLLPAGSAPLTQQIPSLA
VVILAEVWKTTPFMALLLLAGLALVPDDLLKAAQVDGANGWSRLIRVTVPIMKPAILVALLFRTLDAFRIFDNIYVLTGG
SNNTGSVSILGYDNLFKAFNVGLGSAISVLIFLCVAIIAVIFIKGFGASAPTTDGEEARR

Sequences:

>Translated_300_residues
MTDRTSSEGKRAERRLGLLLIAPAALLMLAVTAYPICYAIWLSVQKYSFASPQDRKFVWFDNYITVLSDRYWWSALVVTL
VITVISVLIELVLGLALALVMHRTIFGRGVVRTAVLIPYGIVTVAASYSWYYAWTPGTGYLANLLPAGSAPLTQQIPSLA
VVILAEVWKTTPFMALLLLAGLALVPDDLLKAAQVDGANGWSRLIRVTVPIMKPAILVALLFRTLDAFRIFDNIYVLTGG
SNNTGSVSILGYDNLFKAFNVGLGSAISVLIFLCVAIIAVIFIKGFGASAPTTDGEEARR
>Mature_299_residues
TDRTSSEGKRAERRLGLLLIAPAALLMLAVTAYPICYAIWLSVQKYSFASPQDRKFVWFDNYITVLSDRYWWSALVVTLV
ITVISVLIELVLGLALALVMHRTIFGRGVVRTAVLIPYGIVTVAASYSWYYAWTPGTGYLANLLPAGSAPLTQQIPSLAV
VILAEVWKTTPFMALLLLAGLALVPDDLLKAAQVDGANGWSRLIRVTVPIMKPAILVALLFRTLDAFRIFDNIYVLTGGS
NNTGSVSILGYDNLFKAFNVGLGSAISVLIFLCVAIIAVIFIKGFGASAPTTDGEEARR

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=254, Percent_Identity=29.9212598425197, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789861, Length=288, Percent_Identity=24.6527777777778, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790465, Length=249, Percent_Identity=26.1044176706827, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32593; Mature: 32462

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRTSSEGKRAERRLGLLLIAPAALLMLAVTAYPICYAIWLSVQKYSFASPQDRKFVWF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
DNYITVLSDRYWWSALVVTLVITVISVLIELVLGLALALVMHRTIFGRGVVRTAVLIPYG
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVTVAASYSWYYAWTPGTGYLANLLPAGSAPLTQQIPSLAVVILAEVWKTTPFMALLLLA
HHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
GLALVPDDLLKAAQVDGANGWSRLIRVTVPIMKPAILVALLFRTLDAFRIFDNIYVLTGG
HHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECC
SNNTGSVSILGYDNLFKAFNVGLGSAISVLIFLCVAIIAVIFIKGFGASAPTTDGEEARR
CCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC
>Mature Secondary Structure 
TDRTSSEGKRAERRLGLLLIAPAALLMLAVTAYPICYAIWLSVQKYSFASPQDRKFVWF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
DNYITVLSDRYWWSALVVTLVITVISVLIELVLGLALALVMHRTIFGRGVVRTAVLIPYG
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVTVAASYSWYYAWTPGTGYLANLLPAGSAPLTQQIPSLAVVILAEVWKTTPFMALLLLA
HHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
GLALVPDDLLKAAQVDGANGWSRLIRVTVPIMKPAILVALLFRTLDAFRIFDNIYVLTGG
HHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECC
SNNTGSVSILGYDNLFKAFNVGLGSAISVLIFLCVAIIAVIFIKGFGASAPTTDGEEARR
CCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]