| Definition | Mycobacterium abscessus ATCC 19977 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010397 |
| Length | 5,067,172 |
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The map label for this gene is yhaQ [H]
Identifier: 169628450
GI number: 169628450
Start: 1357245
End: 1358150
Strand: Reverse
Name: yhaQ [H]
Synonym: MAB_1359c
Alternate gene names: 169628450
Gene position: 1358150-1357245 (Counterclockwise)
Preceding gene: 169628451
Following gene: 169628449
Centisome position: 26.8
GC content: 60.82
Gene sequence:
>906_bases GTGACGTATCCGAATTTGGCGGTCGAAATACGAGGACTGACGAAGCTTTTCGGAAAAACCAAGGCACTCGACGGCCTGGA TTTGTCCGTCGCACATGGCGAAGTGGCGGGCTTCCTCGGACCGAACGGCGCCGGCAAGTCCACCACAATCCGGGTACTAC TCGGCCTGCTGCGCGCCGATGCCGGCACCGTACAGCTCCTCGGCGGCGACCCCTGGGTCAATGCCGTCGACCTGCACCGA CTGATCGCCTACGTACCGGGAGATGTCACCCTGTGGCCCAACCTCACCGGCGGGCAGGCCATCGACTTCCTCACCAGAAT GCTTGGTACCGAACATATTTCAATCCGCCGGCGCAATGAACTCATCGAGCGCTTCGAATTGGACCCCACCAAGAAGGCGC GCACATATTCCAAGGGAAATCGTCAGAAGGTGGCGCTGATAGCCGCATTCTGTTCGGACGCCGATCTGTTCATCCTCGAC GAACCGACCTCAGGACTGGATCCCCTCATGGAAACGGTCTTTCAAGAGTGCGTGGCCGAGGTATCGACACGCGGATGTGC GGTACTGCTTTCCAGCCACATTCTGGCCGAGGTGGAAAAGCTCTGTCACCGGGTCACCATCGTGCGCGCCGGCCGTACCG TGCTCTCGGGTTCATTGGCCGAGCTACGGCACTTCATGCGGACGTCGGTCACGGTGCGCACCTTGGCCAATCCCTCAGGA CTGAAATCGATTCCACAGTTGCGCGACGTCACCATCGGAGGCAACCGCGCATCCTTCACCGTGGATCGCAGCGATCTTGA CCGCACGATGGAACAATTGGCCGGTCTCGGGATCGTCGACCTGAGCGTGGCCCCCGCCTCCCTCGAAGAATTGTTCATGC GCGAGTACCAGGGCGCCTCGCGGTGA
Upstream 100 bases:
>100_bases CCGCGATCGAGGTCTACACCGAGGGCCTGATGACAGATTCCACCATGCTCGATGCCTTTGCCGTACAACAGGATAAATCT CACAGCAAAGGAGATCCGAA
Downstream 100 bases:
>100_bases GCACCGATTTCGCGACACTTCCCATCCACCGGCCTGGTACCGACGGAACACCCCGGCACCCACTGACCGGCATCGGCACA TTGATCATGTTGGCCCTACG
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MTYPNLAVEIRGLTKLFGKTKALDGLDLSVAHGEVAGFLGPNGAGKSTTIRVLLGLLRADAGTVQLLGGDPWVNAVDLHR LIAYVPGDVTLWPNLTGGQAIDFLTRMLGTEHISIRRRNELIERFELDPTKKARTYSKGNRQKVALIAAFCSDADLFILD EPTSGLDPLMETVFQECVAEVSTRGCAVLLSSHILAEVEKLCHRVTIVRAGRTVLSGSLAELRHFMRTSVTVRTLANPSG LKSIPQLRDVTIGGNRASFTVDRSDLDRTMEQLAGLGIVDLSVAPASLEELFMREYQGASR
Sequences:
>Translated_301_residues MTYPNLAVEIRGLTKLFGKTKALDGLDLSVAHGEVAGFLGPNGAGKSTTIRVLLGLLRADAGTVQLLGGDPWVNAVDLHR LIAYVPGDVTLWPNLTGGQAIDFLTRMLGTEHISIRRRNELIERFELDPTKKARTYSKGNRQKVALIAAFCSDADLFILD EPTSGLDPLMETVFQECVAEVSTRGCAVLLSSHILAEVEKLCHRVTIVRAGRTVLSGSLAELRHFMRTSVTVRTLANPSG LKSIPQLRDVTIGGNRASFTVDRSDLDRTMEQLAGLGIVDLSVAPASLEELFMREYQGASR >Mature_300_residues TYPNLAVEIRGLTKLFGKTKALDGLDLSVAHGEVAGFLGPNGAGKSTTIRVLLGLLRADAGTVQLLGGDPWVNAVDLHRL IAYVPGDVTLWPNLTGGQAIDFLTRMLGTEHISIRRRNELIERFELDPTKKARTYSKGNRQKVALIAAFCSDADLFILDE PTSGLDPLMETVFQECVAEVSTRGCAVLLSSHILAEVEKLCHRVTIVRAGRTVLSGSLAELRHFMRTSVTVRTLANPSGL KSIPQLRDVTIGGNRASFTVDRSDLDRTMEQLAGLGIVDLSVAPASLEELFMREYQGASR
Specific function: Unknown
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI47078218, Length=329, Percent_Identity=30.3951367781155, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI45446740, Length=329, Percent_Identity=30.3951367781155, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI150417984, Length=308, Percent_Identity=30.8441558441558, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI21536376, Length=310, Percent_Identity=27.741935483871, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI27881501, Length=319, Percent_Identity=27.8996865203762, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI30795238, Length=319, Percent_Identity=27.8996865203762, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI31657092, Length=228, Percent_Identity=31.140350877193, Blast_Score=101, Evalue=9e-22, Organism=Homo sapiens, GI27477115, Length=215, Percent_Identity=33.0232558139535, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI116734710, Length=309, Percent_Identity=27.831715210356, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI27436953, Length=299, Percent_Identity=27.7591973244147, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI153792144, Length=301, Percent_Identity=27.5747508305648, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI6005701, Length=217, Percent_Identity=32.258064516129, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI105990541, Length=309, Percent_Identity=28.1553398058252, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI27262624, Length=215, Percent_Identity=28.3720930232558, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI27262626, Length=215, Percent_Identity=28.3720930232558, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI157502201, Length=225, Percent_Identity=25.3333333333333, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI157502203, Length=225, Percent_Identity=25.3333333333333, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI48994943, Length=222, Percent_Identity=33.3333333333333, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI87081782, Length=222, Percent_Identity=32.8828828828829, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1786319, Length=307, Percent_Identity=29.6416938110749, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1787792, Length=216, Percent_Identity=30.0925925925926, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI48995001, Length=214, Percent_Identity=33.1775700934579, Blast_Score=101, Evalue=8e-23, Organism=Escherichia coli, GI1789593, Length=223, Percent_Identity=28.2511210762332, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1788472, Length=231, Percent_Identity=27.7056277056277, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=29.1479820627803, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=26.457399103139, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=27.7272727272727, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1787712, Length=219, Percent_Identity=27.8538812785388, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=29.8245614035088, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1790525, Length=234, Percent_Identity=28.2051282051282, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87081791, Length=224, Percent_Identity=29.0178571428571, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI87081709, Length=226, Percent_Identity=26.5486725663717, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788450, Length=217, Percent_Identity=25.3456221198157, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787370, Length=219, Percent_Identity=26.9406392694064, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI87082267, Length=217, Percent_Identity=29.9539170506912, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI87082268, Length=208, Percent_Identity=29.3269230769231, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1788506, Length=222, Percent_Identity=28.8288288288288, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=24.2009132420091, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790739, Length=266, Percent_Identity=23.3082706766917, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787758, Length=217, Percent_Identity=26.2672811059908, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI2367384, Length=187, Percent_Identity=30.4812834224599, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786872, Length=217, Percent_Identity=27.6497695852535, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787500, Length=222, Percent_Identity=28.8288288288288, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48994883, Length=231, Percent_Identity=25.974025974026, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1788897, Length=217, Percent_Identity=29.0322580645161, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1789864, Length=245, Percent_Identity=24.0816326530612, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1786398, Length=227, Percent_Identity=25.5506607929515, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788210, Length=213, Percent_Identity=26.7605633802817, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788165, Length=204, Percent_Identity=30.3921568627451, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789032, Length=205, Percent_Identity=27.8048780487805, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786253, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=23.5576923076923, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1790162, Length=234, Percent_Identity=23.9316239316239, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1789963, Length=233, Percent_Identity=26.6094420600858, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1788002, Length=242, Percent_Identity=26.4462809917355, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787112, Length=217, Percent_Identity=30.4147465437788, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71983516, Length=315, Percent_Identity=30.1587301587302, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71983510, Length=315, Percent_Identity=30.1587301587302, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71983523, Length=315, Percent_Identity=30.1587301587302, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17510237, Length=312, Percent_Identity=27.5641025641026, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI115533608, Length=230, Percent_Identity=29.5652173913043, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17565586, Length=216, Percent_Identity=26.8518518518519, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI193202878, Length=213, Percent_Identity=26.7605633802817, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24666092, Length=305, Percent_Identity=27.5409836065574, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI116007184, Length=208, Percent_Identity=34.1346153846154, Blast_Score=108, Evalue=6e-24, Organism=Drosophila melanogaster, GI221500365, Length=208, Percent_Identity=34.1346153846154, Blast_Score=107, Evalue=8e-24, Organism=Drosophila melanogaster, GI24643674, Length=215, Percent_Identity=29.7674418604651, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI28574150, Length=241, Percent_Identity=26.9709543568465, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI116007328, Length=241, Percent_Identity=26.9709543568465, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24648314, Length=317, Percent_Identity=26.4984227129338, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI28573573, Length=235, Percent_Identity=29.7872340425532, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI28573571, Length=235, Percent_Identity=29.7872340425532, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI221512771, Length=218, Percent_Identity=27.9816513761468, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI24650853, Length=214, Percent_Identity=27.1028037383178, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI24650855, Length=214, Percent_Identity=27.1028037383178, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI281362751, Length=213, Percent_Identity=27.2300469483568, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI24582014, Length=203, Percent_Identity=29.064039408867, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24582012, Length=203, Percent_Identity=29.064039408867, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI85725262, Length=226, Percent_Identity=26.9911504424779, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI17136592, Length=212, Percent_Identity=26.4150943396226, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI24585091, Length=222, Percent_Identity=25.2252252252252, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 32682; Mature: 32551
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYPNLAVEIRGLTKLFGKTKALDGLDLSVAHGEVAGFLGPNGAGKSTTIRVLLGLLRAD CCCCCEEEEEHHHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCHHHHHHHHHHHHCC AGTVQLLGGDPWVNAVDLHRLIAYVPGDVTLWPNLTGGQAIDFLTRMLGTEHISIRRRNE CCEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHH LIERFELDPTKKARTYSKGNRQKVALIAAFCSDADLFILDEPTSGLDPLMETVFQECVAE HHHHHCCCCCHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHH VSTRGCAVLLSSHILAEVEKLCHRVTIVRAGRTVLSGSLAELRHFMRTSVTVRTLANPSG HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHEEECCCCCC LKSIPQLRDVTIGGNRASFTVDRSDLDRTMEQLAGLGIVDLSVAPASLEELFMREYQGAS HHHCCHHHCEEECCCCEEEEECHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCC R C >Mature Secondary Structure TYPNLAVEIRGLTKLFGKTKALDGLDLSVAHGEVAGFLGPNGAGKSTTIRVLLGLLRAD CCCCEEEEEHHHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCHHHHHHHHHHHHCC AGTVQLLGGDPWVNAVDLHRLIAYVPGDVTLWPNLTGGQAIDFLTRMLGTEHISIRRRNE CCEEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHH LIERFELDPTKKARTYSKGNRQKVALIAAFCSDADLFILDEPTSGLDPLMETVFQECVAE HHHHHCCCCCHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHH VSTRGCAVLLSSHILAEVEKLCHRVTIVRAGRTVLSGSLAELRHFMRTSVTVRTLANPSG HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHEEECCCCCC LKSIPQLRDVTIGGNRASFTVDRSDLDRTMEQLAGLGIVDLSVAPASLEELFMREYQGAS HHHCCHHHCEEECCCCEEEEECHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]