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The map label for this gene is yqfA [C]

Identifier: 169628301

GI number: 169628301

Start: 1221523

End: 1222263

Strand: Reverse

Name: yqfA [C]

Synonym: MAB_1208c

Alternate gene names: 169628301

Gene position: 1222263-1221523 (Counterclockwise)

Preceding gene: 169628303

Following gene: 169628295

Centisome position: 24.12

GC content: 64.91

Gene sequence:

>741_bases
ATGCAGACCGATGAGTCTCCTGCACCTGAAGCACCGGAAGCACCGACGTCCGAACTCTCCATCCCGATGGCCGCACTGGT
GGGCGGCATCGAAACGCTTCCCATCAAACCCAAGGCACGCGGCTGGATACATTTCTATGCCTGCGTGATCGCCATCGTGA
CCGGGATCGTGCTGGTCTCGGTCGCGTGGTCGCTGCGCTCACCGAAAGCCGGCCTGGCAACCGCGATCTATAGCCTCACC
GTGCTGGGCGTGTTCGGGGTCAGCGCCGCCTACCACCGGGTGAACTGGACATCACCGACCACCCGCACCTGGATGAAACG
GCTCGACCACTCGATGATCTTCGTCTTCATCGCGGGCAGCTACACGCCCTTCGCGATGCTGGCTATGCCGCCGTCGGAGG
GCAATCTGGTGCTGGCCATCGTGTGGGGTGGCGCGCTGGCCGGGGTGATCTTGAAGATGTGCTGGCCGACGGCTCCGCGC
TGGGTGGGAGTGCCGCTGTATCTGTTGCTGGGCTGGGTAGCCGTCGGCTTCTTCCCCACGCTGCTGAACGGCGCCGGGGT
GGCCGCGGTGGTGCTGCTGATCGTCGGCGGCGCCCTGTACAGCATCGGCGCGATCCTGTACGCGGCGAAGTGGCCCAACC
CATGGCCACTGCACTTCGGGCACCACGAGTTCTTCCATGCCGCAACGGTCATCGCGGCGACATGCCACTACATCGCGGTG
TGGTTCGCCGTCTTCGCGTAA

Upstream 100 bases:

>100_bases
ACGGATCCAGCCTAGCGAGCCGCACGCGGGCCGGAGCAGCGGATATGGATCTGCACACAACCTTCACAAACCTGACTTTG
GGAACGCGATACTGTGACGC

Downstream 100 bases:

>100_bases
CGACTCCTCACGCGAGCACTGCCTGAACCGTGGCGAAGTTCCGGACAACGGATTCGGCGTCGTCGGCAGCCATCGCGTGG
ACGACGCGGCCGAGTGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MQTDESPAPEAPEAPTSELSIPMAALVGGIETLPIKPKARGWIHFYACVIAIVTGIVLVSVAWSLRSPKAGLATAIYSLT
VLGVFGVSAAYHRVNWTSPTTRTWMKRLDHSMIFVFIAGSYTPFAMLAMPPSEGNLVLAIVWGGALAGVILKMCWPTAPR
WVGVPLYLLLGWVAVGFFPTLLNGAGVAAVVLLIVGGALYSIGAILYAAKWPNPWPLHFGHHEFFHAATVIAATCHYIAV
WFAVFA

Sequences:

>Translated_246_residues
MQTDESPAPEAPEAPTSELSIPMAALVGGIETLPIKPKARGWIHFYACVIAIVTGIVLVSVAWSLRSPKAGLATAIYSLT
VLGVFGVSAAYHRVNWTSPTTRTWMKRLDHSMIFVFIAGSYTPFAMLAMPPSEGNLVLAIVWGGALAGVILKMCWPTAPR
WVGVPLYLLLGWVAVGFFPTLLNGAGVAAVVLLIVGGALYSIGAILYAAKWPNPWPLHFGHHEFFHAATVIAATCHYIAV
WFAVFA
>Mature_246_residues
MQTDESPAPEAPEAPTSELSIPMAALVGGIETLPIKPKARGWIHFYACVIAIVTGIVLVSVAWSLRSPKAGLATAIYSLT
VLGVFGVSAAYHRVNWTSPTTRTWMKRLDHSMIFVFIAGSYTPFAMLAMPPSEGNLVLAIVWGGALAGVILKMCWPTAPR
WVGVPLYLLLGWVAVGFFPTLLNGAGVAAVVLLIVGGALYSIGAILYAAKWPNPWPLHFGHHEFFHAATVIAATCHYIAV
WFAVFA

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=202, Percent_Identity=25.2475247524752, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 26369; Mature: 26369

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTDESPAPEAPEAPTSELSIPMAALVGGIETLPIKPKARGWIHFYACVIAIVTGIVLVS
CCCCCCCCCCCCCCCCCHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VAWSLRSPKAGLATAIYSLTVLGVFGVSAAYHRVNWTSPTTRTWMKRLDHSMIFVFIAGS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCEEEEEEECC
YTPFAMLAMPPSEGNLVLAIVWGGALAGVILKMCWPTAPRWVGVPLYLLLGWVAVGFFPT
CCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHHHHHHHH
LLNGAGVAAVVLLIVGGALYSIGAILYAAKWPNPWPLHFGHHEFFHAATVIAATCHYIAV
HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
WFAVFA
HHHHHC
>Mature Secondary Structure
MQTDESPAPEAPEAPTSELSIPMAALVGGIETLPIKPKARGWIHFYACVIAIVTGIVLVS
CCCCCCCCCCCCCCCCCHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VAWSLRSPKAGLATAIYSLTVLGVFGVSAAYHRVNWTSPTTRTWMKRLDHSMIFVFIAGS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCEEEEEEECC
YTPFAMLAMPPSEGNLVLAIVWGGALAGVILKMCWPTAPRWVGVPLYLLLGWVAVGFFPT
CCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCHHCHHHHHHHHHHHHHHHHH
LLNGAGVAAVVLLIVGGALYSIGAILYAAKWPNPWPLHFGHHEFFHAATVIAATCHYIAV
HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
WFAVFA
HHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]