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The map label for this gene is ybbO [C]

Identifier: 169628237

GI number: 169628237

Start: 1159821

End: 1160705

Strand: Reverse

Name: ybbO [C]

Synonym: MAB_1144c

Alternate gene names: 169628237

Gene position: 1160705-1159821 (Counterclockwise)

Preceding gene: 169628238

Following gene: 169628236

Centisome position: 22.91

GC content: 65.88

Gene sequence:

>885_bases
GTGAGTAAGTCAACTGCCACATGGAGTGCCGCCAAGCTGCCCTCATTCGAGGGCCGCACCGTCATCATCACCGGAGCCAA
TAGCGGACTCGGCTTGGAGACCGCGCGCGAGCTCGCACGTGTGGGCGCGCACGTCATCATGGCGGTGCGCAACACCGAGA
AGGGCAACGCCGCCCAGGCTTCGATCAAGGGAAGCACCGAGGTGCGTCAGGTCGACGTGGCAGATCTGGCTTCGGTGCGC
GCCTTCGCCGACACCGTGGAGGGCGCCGACATCCTGGTGAACAACGCGGGCATCATGATGGTGCCACCGGCGAAAACTGT
CGATGGCTTCGAAAGCCAAATCGGGACAAACCATCTCGGCGCGTTCGCGCTCACCAACCTGCTACTGCCCAAGCTCACCG
ACCGGGTGATCGCGGTGTCGTCCGTCGCGCATCGTGCCGGGAAAATCGACCTGACCGACCTCAACTACGAGCGCCGCCGA
TACACCCGCGCGGGCGCCTACGGCGCCTCGAAGCTGGCCAATCTGCTGTTCACCAAGGAGTTACAGCGCCGCCTGAGCGC
AGCCGGATCACCGGTACGCGCACTGACAGTCCATCCCGGAGTCGCCGCCACCGAGCTGCAGTCGCACAGCGGGAACCCGA
TCTTCGAACTGGCGTTGAAGACCGGCAACCTCTTCGCCCAGAATGCCGCGCACGGCGCCCTCCCGACGCTGTACGCCGCC
TCCCAAGACCTGCCGGGAGACACATACATCGGGCCCGACGGGCCGTTCGAGGCCAAGGGTTACCCCACGAGGGTGGGCCG
CAGCGGTCGGGCGCAGGACACCGAGACCGCCAAGGGCCTCTGGCGGCTGTCCGAGCAGCTCACCGGGGTTTCTTTCCCGC
TTTAA

Upstream 100 bases:

>100_bases
CCAGGATGTCGCCGCGCTCACCGGCGGCCTGAAGATCACGAAGCGCTGAAGCCGCTCAGCCTCTCGACGGTGATGGCCCC
GACCGTTAGGGTCAGCTCCC

Downstream 100 bases:

>100_bases
CCAGCGCTGATTGGCCTTTTGCGTTCACGCTCGGCTACCCTGAGCAGGCTGTCACGGCGAGGGTGGGTCTCCCACCGTTA
TCGACGGGATCATGGATTTC

Product: short-chain dehydrogenase/reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSKSTATWSAAKLPSFEGRTVIITGANSGLGLETARELARVGAHVIMAVRNTEKGNAAQASIKGSTEVRQVDVADLASVR
AFADTVEGADILVNNAGIMMVPPAKTVDGFESQIGTNHLGAFALTNLLLPKLTDRVIAVSSVAHRAGKIDLTDLNYERRR
YTRAGAYGASKLANLLFTKELQRRLSAAGSPVRALTVHPGVAATELQSHSGNPIFELALKTGNLFAQNAAHGALPTLYAA
SQDLPGDTYIGPDGPFEAKGYPTRVGRSGRAQDTETAKGLWRLSEQLTGVSFPL

Sequences:

>Translated_294_residues
MSKSTATWSAAKLPSFEGRTVIITGANSGLGLETARELARVGAHVIMAVRNTEKGNAAQASIKGSTEVRQVDVADLASVR
AFADTVEGADILVNNAGIMMVPPAKTVDGFESQIGTNHLGAFALTNLLLPKLTDRVIAVSSVAHRAGKIDLTDLNYERRR
YTRAGAYGASKLANLLFTKELQRRLSAAGSPVRALTVHPGVAATELQSHSGNPIFELALKTGNLFAQNAAHGALPTLYAA
SQDLPGDTYIGPDGPFEAKGYPTRVGRSGRAQDTETAKGLWRLSEQLTGVSFPL
>Mature_293_residues
SKSTATWSAAKLPSFEGRTVIITGANSGLGLETARELARVGAHVIMAVRNTEKGNAAQASIKGSTEVRQVDVADLASVRA
FADTVEGADILVNNAGIMMVPPAKTVDGFESQIGTNHLGAFALTNLLLPKLTDRVIAVSSVAHRAGKIDLTDLNYERRRY
TRAGAYGASKLANLLFTKELQRRLSAAGSPVRALTVHPGVAATELQSHSGNPIFELALKTGNLFAQNAAHGALPTLYAAS
QDLPGDTYIGPDGPFEAKGYPTRVGRSGRAQDTETAKGLWRLSEQLTGVSFPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI225579078, Length=309, Percent_Identity=44.336569579288, Blast_Score=195, Evalue=5e-50,
Organism=Homo sapiens, GI186928839, Length=290, Percent_Identity=43.1034482758621, Blast_Score=186, Evalue=2e-47,
Organism=Homo sapiens, GI166795268, Length=309, Percent_Identity=39.4822006472492, Blast_Score=167, Evalue=1e-41,
Organism=Homo sapiens, GI10190746, Length=306, Percent_Identity=38.8888888888889, Blast_Score=154, Evalue=6e-38,
Organism=Homo sapiens, GI19923931, Length=265, Percent_Identity=43.0188679245283, Blast_Score=153, Evalue=2e-37,
Organism=Homo sapiens, GI7706523, Length=292, Percent_Identity=36.986301369863, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI193804850, Length=249, Percent_Identity=40.1606425702811, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI146231950, Length=294, Percent_Identity=37.4149659863946, Blast_Score=117, Evalue=1e-26,
Organism=Escherichia coli, GI1786701, Length=208, Percent_Identity=30.2884615384615, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17558006, Length=209, Percent_Identity=37.799043062201, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI72001364, Length=221, Percent_Identity=36.6515837104072, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI193207620, Length=301, Percent_Identity=29.2358803986711, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17532805, Length=298, Percent_Identity=29.8657718120805, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17532791, Length=298, Percent_Identity=27.1812080536913, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71992402, Length=292, Percent_Identity=29.7945205479452, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17505416, Length=254, Percent_Identity=32.2834645669291, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17535059, Length=290, Percent_Identity=28.2758620689655, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI32565532, Length=124, Percent_Identity=37.9032258064516, Blast_Score=72, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6324820, Length=273, Percent_Identity=31.1355311355311, Blast_Score=85, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28573296, Length=291, Percent_Identity=42.2680412371134, Blast_Score=164, Evalue=6e-41,
Organism=Drosophila melanogaster, GI24586328, Length=296, Percent_Identity=39.1891891891892, Blast_Score=157, Evalue=6e-39,
Organism=Drosophila melanogaster, GI19921754, Length=299, Percent_Identity=39.7993311036789, Blast_Score=153, Evalue=2e-37,
Organism=Drosophila melanogaster, GI22024069, Length=298, Percent_Identity=38.9261744966443, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI45554248, Length=293, Percent_Identity=37.8839590443686, Blast_Score=148, Evalue=5e-36,
Organism=Drosophila melanogaster, GI24640117, Length=293, Percent_Identity=37.8839590443686, Blast_Score=148, Evalue=5e-36,
Organism=Drosophila melanogaster, GI24656154, Length=265, Percent_Identity=38.4905660377359, Blast_Score=136, Evalue=2e-32,
Organism=Drosophila melanogaster, GI19922628, Length=265, Percent_Identity=38.4905660377359, Blast_Score=136, Evalue=2e-32,
Organism=Drosophila melanogaster, GI161076371, Length=303, Percent_Identity=37.953795379538, Blast_Score=134, Evalue=5e-32,
Organism=Drosophila melanogaster, GI24647946, Length=241, Percent_Identity=36.5145228215768, Blast_Score=124, Evalue=8e-29,
Organism=Drosophila melanogaster, GI45553409, Length=242, Percent_Identity=36.3636363636364, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24647948, Length=242, Percent_Identity=36.3636363636364, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI20129347, Length=291, Percent_Identity=30.5841924398625, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24647931, Length=254, Percent_Identity=33.8582677165354, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI21357041, Length=210, Percent_Identity=30.952380952381, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24644339, Length=208, Percent_Identity=31.7307692307692, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI23397609, Length=204, Percent_Identity=32.843137254902, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24643142, Length=193, Percent_Identity=29.5336787564767, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571526, Length=219, Percent_Identity=30.1369863013699, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31007; Mature: 30876

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSTATWSAAKLPSFEGRTVIITGANSGLGLETARELARVGAHVIMAVRNTEKGNAAQA
CCCCCCCCCHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCHHEEEEEECCCCCCCEEE
SIKGSTEVRQVDVADLASVRAFADTVEGADILVNNAGIMMVPPAKTVDGFESQIGTNHLG
ECCCCCHHEEECHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCHHHHCCCCHHH
AFALTNLLLPKLTDRVIAVSSVAHRAGKIDLTDLNYERRRYTRAGAYGASKLANLLFTKE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHH
LQRRLSAAGSPVRALTVHPGVAATELQSHSGNPIFELALKTGNLFAQNAAHGALPTLYAA
HHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCCEEEEEEECCCEEECCCCCCCCHHHHHC
SQDLPGDTYIGPDGPFEAKGYPTRVGRSGRAQDTETAKGLWRLSEQLTGVSFPL
CCCCCCCCEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKSTATWSAAKLPSFEGRTVIITGANSGLGLETARELARVGAHVIMAVRNTEKGNAAQA
CCCCCCCCHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCHHEEEEEECCCCCCCEEE
SIKGSTEVRQVDVADLASVRAFADTVEGADILVNNAGIMMVPPAKTVDGFESQIGTNHLG
ECCCCCHHEEECHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCHHHHCCCCHHH
AFALTNLLLPKLTDRVIAVSSVAHRAGKIDLTDLNYERRRYTRAGAYGASKLANLLFTKE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHH
LQRRLSAAGSPVRALTVHPGVAATELQSHSGNPIFELALKTGNLFAQNAAHGALPTLYAA
HHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCCEEEEEEECCCEEECCCCCCCCHHHHHC
SQDLPGDTYIGPDGPFEAKGYPTRVGRSGRAQDTETAKGLWRLSEQLTGVSFPL
CCCCCCCCEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]