Click here to switch to the map view.

The map label for this gene is yeaM [H]

Identifier: 169628203

GI number: 169628203

Start: 1122997

End: 1123752

Strand: Reverse

Name: yeaM [H]

Synonym: MAB_1109c

Alternate gene names: 169628203

Gene position: 1123752-1122997 (Counterclockwise)

Preceding gene: 169628205

Following gene: 169628202

Centisome position: 22.18

GC content: 66.93

Gene sequence:

>756_bases
ATGCGGAACATACCGCTGGCCGATGTCGATCACCTGCCCCATGAGGTATTGCCGATCAGCACCGACTACGCGGATGGGCA
GCTACTGGACTGGCACCGGCATCGGCGCGCACAGTTCCTGTACGCCACCACCGGCACCATGATCGTGGACACCGATGCCG
GGACGTGGACCGTGCCCACCCACCGCGCGGTGATGATCCCCGCGCGTACCAGGCACCGGGTGCGCATGTTCGAGGTACGC
ACCGGCAGTCTCTACGTTGAGCCGTCGGCGGCGCCGTGGTGGCCGACATCGTGTGTGGTGGTCGACGTCAGCCCGCTCAT
GCATGAGCTACTCAGTGCGGCAGCCGATCTGGATGTCGACTATGACAGATCGGGCCGCGGCGGAGCCCTCATCACACTGT
TGCTGCATGAGATTGCGTCCTTCACCGCGCTGCCGCTGCACGTGGACATCCCATGGTCGGCCGATCTGGCCGAGCTGTGC
CGCACATACCTCGACGCACCCGATGTGTCGGTGACCAACGCCGAATGGGCACGGCGACTGCGTACAAGCGAACGCGCGCT
GACGCGCCGCTTCCGGGACGAGGTCGCGATGAGCCCCGCCGCGTGGCGTGTGCGGGCACGGCTGCTGGCGGCGGTGCCGC
TGCTGCGCGACCATTCGGTGACTCAGGTTGCCGGGCGGCTGGGCTACGCCACCCCGGCCGCGTTCTCCTATGCCTTTGGC
CGGGCGTTCAACATTGCCCCGTCCAGCGTTCGATGA

Upstream 100 bases:

>100_bases
CAGCACGAGCACCAGCATGAGAACAGTTCATCCGACGCCGTCTCCGCAGACAATCGAATGACAGCTCAATACATTCGACT
TTCAGCCGTATCCTGACCAG

Downstream 100 bases:

>100_bases
CCTAGAGTCCATCGCTATGAGCCGGACCGCGATCATCATCGTCGTTGGAGTTGTCGCAGCGCTGGCGTTCCTCGCCGTGG
GCGCCGTAGTCAAGAAGGTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MRNIPLADVDHLPHEVLPISTDYADGQLLDWHRHRRAQFLYATTGTMIVDTDAGTWTVPTHRAVMIPARTRHRVRMFEVR
TGSLYVEPSAAPWWPTSCVVVDVSPLMHELLSAAADLDVDYDRSGRGGALITLLLHEIASFTALPLHVDIPWSADLAELC
RTYLDAPDVSVTNAEWARRLRTSERALTRRFRDEVAMSPAAWRVRARLLAAVPLLRDHSVTQVAGRLGYATPAAFSYAFG
RAFNIAPSSVR

Sequences:

>Translated_251_residues
MRNIPLADVDHLPHEVLPISTDYADGQLLDWHRHRRAQFLYATTGTMIVDTDAGTWTVPTHRAVMIPARTRHRVRMFEVR
TGSLYVEPSAAPWWPTSCVVVDVSPLMHELLSAAADLDVDYDRSGRGGALITLLLHEIASFTALPLHVDIPWSADLAELC
RTYLDAPDVSVTNAEWARRLRTSERALTRRFRDEVAMSPAAWRVRARLLAAVPLLRDHSVTQVAGRLGYATPAAFSYAFG
RAFNIAPSSVR
>Mature_251_residues
MRNIPLADVDHLPHEVLPISTDYADGQLLDWHRHRRAQFLYATTGTMIVDTDAGTWTVPTHRAVMIPARTRHRVRMFEVR
TGSLYVEPSAAPWWPTSCVVVDVSPLMHELLSAAADLDVDYDRSGRGGALITLLLHEIASFTALPLHVDIPWSADLAELC
RTYLDAPDVSVTNAEWARRLRTSERALTRRFRDEVAMSPAAWRVRARLLAAVPLLRDHSVTQVAGRLGYATPAAFSYAFG
RAFNIAPSSVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=219, Percent_Identity=26.9406392694064, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28033; Mature: 28033

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNIPLADVDHLPHEVLPISTDYADGQLLDWHRHRRAQFLYATTGTMIVDTDAGTWTVPT
CCCCCCCCHHCCCHHHEECCCCCCCCCEEHHHHHCCEEEEEEECCEEEEECCCCEEECCC
HRAVMIPARTRHRVRMFEVRTGSLYVEPSAAPWWPTSCVVVDVSPLMHELLSAAADLDVD
CCEEEEECCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCC
YDRSGRGGALITLLLHEIASFTALPLHVDIPWSADLAELCRTYLDAPDVSVTNAEWARRL
CCCCCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHCCCCCCEECCHHHHHHH
RTSERALTRRFRDEVAMSPAAWRVRARLLAAVPLLRDHSVTQVAGRLGYATPAAFSYAFG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHC
RAFNIAPSSVR
CEEECCCCCCC
>Mature Secondary Structure
MRNIPLADVDHLPHEVLPISTDYADGQLLDWHRHRRAQFLYATTGTMIVDTDAGTWTVPT
CCCCCCCCHHCCCHHHEECCCCCCCCCEEHHHHHCCEEEEEEECCEEEEECCCCEEECCC
HRAVMIPARTRHRVRMFEVRTGSLYVEPSAAPWWPTSCVVVDVSPLMHELLSAAADLDVD
CCEEEEECCCCCEEEEEEEECCEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCC
YDRSGRGGALITLLLHEIASFTALPLHVDIPWSADLAELCRTYLDAPDVSVTNAEWARRL
CCCCCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHCCCCCCEECCHHHHHHH
RTSERALTRRFRDEVAMSPAAWRVRARLLAAVPLLRDHSVTQVAGRLGYATPAAFSYAFG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHC
RAFNIAPSSVR
CEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]