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The map label for this gene is ycdM [C]

Identifier: 169628154

GI number: 169628154

Start: 1068663

End: 1069511

Strand: Reverse

Name: ycdM [C]

Synonym: MAB_1059c

Alternate gene names: 169628154

Gene position: 1069511-1068663 (Counterclockwise)

Preceding gene: 169628163

Following gene: 169628150

Centisome position: 21.11

GC content: 67.49

Gene sequence:

>849_bases
ATGGACTACGGCCTCGTTCTGTTCACCAGTGACCGCGGCATCTCGCCGGCCATCGCCGCCAAGGCCGCCGAGGACGGCGG
GTTCAGCACCTTCTACGTTCCCGAGCACACCCACATCCCGGTCAAGCGCGAGGCCGCCCACCCCGGCACCGGCGGAGCCG
AGCTGCCCGACGACCGCTATATGCGCACCCTGGATCCCTGGGTGTCCCTGGGCGCCGCCTGCGCGGTCACCTCGAAGATT
CGCCTCGCCACCGCGGTCGCCATCCCCGTCGAGCACGACCCCATCACCCTGGCCAAATCGATTGCCACCCTTGACCACAT
GAGCGGCGGGCGTGTCACCGTGGGGGTCGGCTATGGCTGGAACACCGACGAGCTGGCCGATCACCATGTTCCCGCGGGGC
GCCGCCGCACCATGCTGCGCGAGTACATCGAAGCGATGCGCAGGCTCTGGGAAGAGGAAGAAGCAAGCTACTCAGGCGAA
TTCGTCAACTTCGGGCCCAGCTGGGCCTGGCCCAAGACCGTGCAAAAGCACGTGCCGGTGATCGTGGGCGCGGGCGGTAC
CGAGAAGAACTTCACGTGGATCGCCAAGAATGCCGACGGCTGGATGTCCACTCCGCGCGATGAGGACATCGCCGGAAAGA
TCGTGGCGCTCAAGGAGGCATGGAAGGCGGCCGGGCGCGACGGCGACCCGCTGATCTACGTGCTGGCGGGCAAGCCCGAC
CCCGAGCAGCTGGCCGCGTGGCGCGAGCTGGGCGTCACCGAGGCGATCTTCGGGATGCCCGACCGCTCCGAGGAAGAGGT
GCGGGCGTACATCGACAGGCTGTCCGGAAAACTCGCCGCTTTCGCCTAA

Upstream 100 bases:

>100_bases
ACCCGCAGGGCGGTCATCCGTCTGGCTCACCGTGATCCGTTCCCTGCGTGATTCAGCACCCGCCCTCGACAACAAAACTG
GAACACGTTCTAATTGATGG

Downstream 100 bases:

>100_bases
CGCACCGAGAACGGCGGCAGGGCGGCGAACTTGTGCGCCACCCGGATGGTCGGCGTCACTCCGGCCACCCACCGGCGCAG
CCGCGTCAGCGGGTGATCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MDYGLVLFTSDRGISPAIAAKAAEDGGFSTFYVPEHTHIPVKREAAHPGTGGAELPDDRYMRTLDPWVSLGAACAVTSKI
RLATAVAIPVEHDPITLAKSIATLDHMSGGRVTVGVGYGWNTDELADHHVPAGRRRTMLREYIEAMRRLWEEEEASYSGE
FVNFGPSWAWPKTVQKHVPVIVGAGGTEKNFTWIAKNADGWMSTPRDEDIAGKIVALKEAWKAAGRDGDPLIYVLAGKPD
PEQLAAWRELGVTEAIFGMPDRSEEEVRAYIDRLSGKLAAFA

Sequences:

>Translated_282_residues
MDYGLVLFTSDRGISPAIAAKAAEDGGFSTFYVPEHTHIPVKREAAHPGTGGAELPDDRYMRTLDPWVSLGAACAVTSKI
RLATAVAIPVEHDPITLAKSIATLDHMSGGRVTVGVGYGWNTDELADHHVPAGRRRTMLREYIEAMRRLWEEEEASYSGE
FVNFGPSWAWPKTVQKHVPVIVGAGGTEKNFTWIAKNADGWMSTPRDEDIAGKIVALKEAWKAAGRDGDPLIYVLAGKPD
PEQLAAWRELGVTEAIFGMPDRSEEEVRAYIDRLSGKLAAFA
>Mature_282_residues
MDYGLVLFTSDRGISPAIAAKAAEDGGFSTFYVPEHTHIPVKREAAHPGTGGAELPDDRYMRTLDPWVSLGAACAVTSKI
RLATAVAIPVEHDPITLAKSIATLDHMSGGRVTVGVGYGWNTDELADHHVPAGRRRTMLREYIEAMRRLWEEEEASYSGE
FVNFGPSWAWPKTVQKHVPVIVGAGGTEKNFTWIAKNADGWMSTPRDEDIAGKIVALKEAWKAAGRDGDPLIYVLAGKPD
PEQLAAWRELGVTEAIFGMPDRSEEEVRAYIDRLSGKLAAFA

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=227, Percent_Identity=26.431718061674, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 30787; Mature: 30787

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYGLVLFTSDRGISPAIAAKAAEDGGFSTFYVPEHTHIPVKREAAHPGTGGAELPDDRY
CCCEEEEEECCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
MRTLDPWVSLGAACAVTSKIRLATAVAIPVEHDPITLAKSIATLDHMSGGRVTVGVGYGW
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
NTDELADHHVPAGRRRTMLREYIEAMRRLWEEEEASYSGEFVNFGPSWAWPKTVQKHVPV
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHCCCE
IVGAGGTEKNFTWIAKNADGWMSTPRDEDIAGKIVALKEAWKAAGRDGDPLIYVLAGKPD
EEECCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCC
PEQLAAWRELGVTEAIFGMPDRSEEEVRAYIDRLSGKLAAFA
HHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCCHHHCC
>Mature Secondary Structure
MDYGLVLFTSDRGISPAIAAKAAEDGGFSTFYVPEHTHIPVKREAAHPGTGGAELPDDRY
CCCEEEEEECCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
MRTLDPWVSLGAACAVTSKIRLATAVAIPVEHDPITLAKSIATLDHMSGGRVTVGVGYGW
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
NTDELADHHVPAGRRRTMLREYIEAMRRLWEEEEASYSGEFVNFGPSWAWPKTVQKHVPV
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHCCCE
IVGAGGTEKNFTWIAKNADGWMSTPRDEDIAGKIVALKEAWKAAGRDGDPLIYVLAGKPD
EEECCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCC
PEQLAAWRELGVTEAIFGMPDRSEEEVRAYIDRLSGKLAAFA
HHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]