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The map label for this gene is yjfH [C]

Identifier: 169627980

GI number: 169627980

Start: 876306

End: 877118

Strand: Direct

Name: yjfH [C]

Synonym: MAB_0881

Alternate gene names: 169627980

Gene position: 876306-877118 (Clockwise)

Preceding gene: 169627979

Following gene: 169627981

Centisome position: 17.29

GC content: 65.19

Gene sequence:

>813_bases
ATGTTGGTTATCGATGTCCACGACCCCGCCGATTCGAGGCTCGACAGCTTCCGCGATCTCAATAGCGTCGACCGTAGGCC
CGACCTGCCTAGCGGTAAGGGCCTGGTGATCGCCGAAGGCGTATTGGTTGTGCAGCGCATGCTGGCCTCGCGCTTCAGGC
CGCTCGCGCTGTTGGGTACCGACCGTCGATTGAGCGAACTGGCAGCTGATCTGGAACCGGTCGACGTGCCGTACTACCGG
GCCAGCGCCGAGGTGATGGCGGAAGTCGTTGGCTTTCATCTCAATCGCGGAGTGCTCGCGGCATCCCGTCGCCCCGAGGA
ACTCCCGGCGGCCGACTTGCTGCAGACGGCACGCACGGTGGCCGTGCTCGAGGGTGTGAACGACCACGAGAATCTGGGCT
CGATCTTCCGTAACGCCGCCGGAATGGGAGTGGACGCCGTGCTTTTCGGCAGCGGCTGCGCCGATCCGCTCTATCGCAGG
GCCGTCCGGGTGTCGATGGGCCATGCGCTGCTGGTGCCGTTCGCGCGTCTTCCGGAATGGCCAAAGTCTTTGTACAGGCT
GCGAGACAGTGGCTTCCGGCTGTTGGCCATGACTCCGGCGGGTGACTCGAAGGCGCTGGCTGATGCGATCCCGCCGTTGC
GGGCCGAGAAGGTGGCGTTGATGGTCGGTGCCGAGGGGCCTGGATTGACCGACGTGGCCCTGCGTGCCAGCGATCTGCGC
GTACGTATCCCGATGGCCAATGGCACCGATTCGTTGAATGTCGCTACCGCCGCGGCGCTGGCGTTCTACGAGCGCGCTAG
GCTCGCGCCATGA

Upstream 100 bases:

>100_bases
TGTTGTCGCAGGCGAAGTTCCGGAGGCCGACGATATGGTGCCGCCTGCCCCGGCTGCCACCCCGGTATGCGAGCCGACGC
CCTTGGCGAGGCGGTCGTAG

Downstream 100 bases:

>100_bases
CCGACTCCGATACCCCGTGGGTGGAGGGCATCGTCTCGGCGATGTGTGTGGCCGTGGTGGTCGCGGTCGCGGTGGTGGTG
CTGAGCCTGGGGCTGATCCA

Product: putative tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MLVIDVHDPADSRLDSFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPLALLGTDRRLSELAADLEPVDVPYYR
ASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTVAVLEGVNDHENLGSIFRNAAGMGVDAVLFGSGCADPLYRR
AVRVSMGHALLVPFARLPEWPKSLYRLRDSGFRLLAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLR
VRIPMANGTDSLNVATAAALAFYERARLAP

Sequences:

>Translated_270_residues
MLVIDVHDPADSRLDSFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPLALLGTDRRLSELAADLEPVDVPYYR
ASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTVAVLEGVNDHENLGSIFRNAAGMGVDAVLFGSGCADPLYRR
AVRVSMGHALLVPFARLPEWPKSLYRLRDSGFRLLAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLR
VRIPMANGTDSLNVATAAALAFYERARLAP
>Mature_270_residues
MLVIDVHDPADSRLDSFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPLALLGTDRRLSELAADLEPVDVPYYR
ASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTVAVLEGVNDHENLGSIFRNAAGMGVDAVLFGSGCADPLYRR
AVRVSMGHALLVPFARLPEWPKSLYRLRDSGFRLLAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLR
VRIPMANGTDSLNVATAAALAFYERARLAP

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=238, Percent_Identity=26.890756302521, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29040; Mature: 29040

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVIDVHDPADSRLDSFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPLALLGT
CEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEECC
DRRLSELAADLEPVDVPYYRASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTV
CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHH
AVLEGVNDHENLGSIFRNAAGMGVDAVLFGSGCADPLYRRAVRVSMGHALLVPFARLPEW
HHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHEHHHHHCCHH
PKSLYRLRDSGFRLLAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLR
HHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCHHHHEEECCCE
VRIPMANGTDSLNVATAAALAFYERARLAP
EEEEECCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLVIDVHDPADSRLDSFRDLNSVDRRPDLPSGKGLVIAEGVLVVQRMLASRFRPLALLGT
CEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEECC
DRRLSELAADLEPVDVPYYRASAEVMAEVVGFHLNRGVLAASRRPEELPAADLLQTARTV
CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHH
AVLEGVNDHENLGSIFRNAAGMGVDAVLFGSGCADPLYRRAVRVSMGHALLVPFARLPEW
HHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHEHHHHHCCHH
PKSLYRLRDSGFRLLAMTPAGDSKALADAIPPLRAEKVALMVGAEGPGLTDVALRASDLR
HHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEECCCCCCHHHHEEECCCE
VRIPMANGTDSLNVATAAALAFYERARLAP
EEEEECCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]