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The map label for this gene is psd

Identifier: 169627742

GI number: 169627742

Start: 641294

End: 642007

Strand: Reverse

Name: psd

Synonym: MAB_0639c

Alternate gene names: 169627742

Gene position: 642007-641294 (Counterclockwise)

Preceding gene: 169627743

Following gene: 169627741

Centisome position: 12.67

GC content: 67.93

Gene sequence:

>714_bases
GTGGCAAGACGCCCCCGCCCCGCAGGTTCAGAGCCGGATTCCGGCATTCCGCATATCGTCGAGCTCGTCCGCTCGACGAT
TCCCCCGATCCATCCGGCAGGTCTTCCGTTTATCGCCGGCGGATTGGGACTGGCGGGTCTGGGCGTCAGGAACAGGTGGG
TTCGCGGGACCGGGCTGGCGCTCGCGGGCGCGTGCGCCGGGTTCTTCCGGCACCCACCACGTGTGCCACCCAACCGCGCC
GATGTGGTGGTGGCCGCCGCCGACGGGCAGGTCTGCCTCGTCGATCGGGCGGTGCCGCCGCCGGAGCTGGGCCTGCCCGC
CGAACCACTGCCGCGCATCAGCATCTTTCTGTCCGTCTTCGACGTGCATGTGCAACGGGTGCCTGTCGCGGGTGAGGCGA
CCGCCGTCATCCATCGCAGCGGACAGTTCCTGTCCGCCGATCGTGCCGAGGCGAGCGTCGCCAACGAACGCAACAGCGTG
CAGATCCGCACCCGCACCGGCCACGACGTGATCGTGGTGCAAATCGCCGGGCTCATCGCTCGCCGCATCGTGTGCCACGC
CAAGGTAGGCGATCAACTGTCCATCGGCGACACCTACGGCCTGATCCGATTCGGTTCCCGGGTGGACACCTACCTGCCCG
AGGGGTCGAAAATTCTTGTCCAGCAAGGACAGCGCGCGGTGGGTGCCGAGACTGTGCTGGCCGAGTTGCCATGA

Upstream 100 bases:

>100_bases
GACAGTCAGTGTGTGGAATCTGAGCTGATCAAGGCGGCCGTGAGCGGCGTTGCGATCAGTGTGTTCCCCAGCTCGCGGAC
CGCATCACTAGGATGGTCCG

Downstream 100 bases:

>100_bases
TCAGCAGTCCAGTACCCAAACGCCCGGTTCATATCCGCATCCTGCCGAGTGTGATGACGGTGCTGGCGATCTGCGGTGGC
CTGTCGTCGATCAAGTTCGC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MARRPRPAGSEPDSGIPHIVELVRSTIPPIHPAGLPFIAGGLGLAGLGVRNRWVRGTGLALAGACAGFFRHPPRVPPNRA
DVVVAAADGQVCLVDRAVPPPELGLPAEPLPRISIFLSVFDVHVQRVPVAGEATAVIHRSGQFLSADRAEASVANERNSV
QIRTRTGHDVIVVQIAGLIARRIVCHAKVGDQLSIGDTYGLIRFGSRVDTYLPEGSKILVQQGQRAVGAETVLAELP

Sequences:

>Translated_237_residues
MARRPRPAGSEPDSGIPHIVELVRSTIPPIHPAGLPFIAGGLGLAGLGVRNRWVRGTGLALAGACAGFFRHPPRVPPNRA
DVVVAAADGQVCLVDRAVPPPELGLPAEPLPRISIFLSVFDVHVQRVPVAGEATAVIHRSGQFLSADRAEASVANERNSV
QIRTRTGHDVIVVQIAGLIARRIVCHAKVGDQLSIGDTYGLIRFGSRVDTYLPEGSKILVQQGQRAVGAETVLAELP
>Mature_236_residues
ARRPRPAGSEPDSGIPHIVELVRSTIPPIHPAGLPFIAGGLGLAGLGVRNRWVRGTGLALAGACAGFFRHPPRVPPNRAD
VVVAAADGQVCLVDRAVPPPELGLPAEPLPRISIFLSVFDVHVQRVPVAGEATAVIHRSGQFLSADRAEASVANERNSVQ
IRTRTGHDVIVVQIAGLIARRIVCHAKVGDQLSIGDTYGLIRFGSRVDTYLPEGSKILVQQGQRAVGAETVLAELP

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_MYCA9 (B1MH53)

Other databases:

- EMBL:   CU458896
- RefSeq:   YP_001701391.1
- EnsemblBacteria:   EBMYCT00000005774
- GeneID:   5963175
- GenomeReviews:   CU458896_GR
- KEGG:   mab:MAB_0639c
- GeneTree:   EBGT00050000017584
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   MABS561007:MAB_0639C-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25021; Mature: 24890

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRPRPAGSEPDSGIPHIVELVRSTIPPIHPAGLPFIAGGLGLAGLGVRNRWVRGTGLA
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCEECCCCHH
LAGACAGFFRHPPRVPPNRADVVVAAADGQVCLVDRAVPPPELGLPAEPLPRISIFLSVF
HHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
DVHVQRVPVAGEATAVIHRSGQFLSADRAEASVANERNSVQIRTRTGHDVIVVQIAGLIA
HHHHHCCCCCCCCEEEEECCCCEEECCHHHHHHCCCCCEEEEEEECCCCEEEHHHHHHHH
RRIVCHAKVGDQLSIGDTYGLIRFGSRVDTYLPEGSKILVQQGQRAVGAETVLAELP
HHHHHHCCCCCEEECCCCEEEEEECCCHHHCCCCCCEEEEECCCCHHCHHHHHCCCC
>Mature Secondary Structure 
ARRPRPAGSEPDSGIPHIVELVRSTIPPIHPAGLPFIAGGLGLAGLGVRNRWVRGTGLA
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCEECCCCHH
LAGACAGFFRHPPRVPPNRADVVVAAADGQVCLVDRAVPPPELGLPAEPLPRISIFLSVF
HHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
DVHVQRVPVAGEATAVIHRSGQFLSADRAEASVANERNSVQIRTRTGHDVIVVQIAGLIA
HHHHHCCCCCCCCEEEEECCCCEEECCHHHHHHCCCCCEEEEEEECCCCEEEHHHHHHHH
RRIVCHAKVGDQLSIGDTYGLIRFGSRVDTYLPEGSKILVQQGQRAVGAETVLAELP
HHHHHHCCCCCEEECCCCEEEEEECCCHHHCCCCCCEEEEECCCCHHCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA