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The map label for this gene is radA [H]

Identifier: 169627667

GI number: 169627667

Start: 564855

End: 566276

Strand: Reverse

Name: radA [H]

Synonym: MAB_0564c

Alternate gene names: 169627667

Gene position: 566276-564855 (Counterclockwise)

Preceding gene: 169627668

Following gene: 169627665

Centisome position: 11.18

GC content: 64.77

Gene sequence:

>1422_bases
GTGGCCAAACCCCGCGCGCAATATCGCTGTTCGGAATGTCAGCACACCACCGCCAAATGGGTTGGTCGCTGCCCCGACTG
CGGCACCTGGGGCAGCGTCAGCGAAACCGCGGTGTTGTCCTCCATCGGCGGTCTGGGCGCGGTTCGCGCGGTAGCGCCAG
CCTCGGCGGCGGTGCCGATCACCAGCATCGCGACCGATACCACCCGGCATCAGCCCACCGGCGTCTCCGAGCTGGACAGA
GTGCTCGGTGGCGGCCTCATCCCCGGCTCGGTCAATCTGCTCGCCGGCGAGCCGGGAGTCGGGAAGTCAACCCTGCTGTT
GAAGGTCGTCCATCAATGGGCCGCCTCCGGCGGGCGAGCCCTGTACATCAGCGGTGAGGAGTCCGCGGCTCAGGTCCGGT
TGCGGGCCGAACGCACCGGCTGCGTGCACGACGAGGTCTACCTGGCTTCGGAATCGGACCTGCACAGCGTGCTCGGACAC
ATCGAGGCAGTCAAACCCACACTGGCGATTATTGATTCGGTACAGACCATGTCCACGACCGACGCCGACGGCGTAACCGG
CGGTGTGACTCAGGTGCGCGCGGTGACTACGGCACTGACCATGGCCGCCAAGTCGTCGGGTGTGGCAATGGTGTTGGTCG
GGCATGTCACCAAGGACGGCGCAATCGCCGGCCCGCGGTCACTGGAACATCTCGTCGATGTGGTGTTGCATTTCGAGGGC
GACAAACATTCCGCGTTGCGGATGGTGCGCGGTATCAAGAATCGATTCGGTGCCGCGGACGAAGTCGGTTGCTTTCAGCT
ACGGGACAAGGGAATCGAGTGTGTTTCCGACCCCTCTGGGCTTTTTCTGGAGCATCGCGAGAAGGCGGCGGCCGGTACCG
CGGTGACAGTCACCCTCGACGGCAAGCGGCCACTGCTCGGTGAGGTGCAATCCCTTGTCACCACGTCGACCAACCCATCA
CCCCGGCGTGCGGTGAGCGGCCTCGATCACGCACGCTCGGCGATGGTCACCGCCGTGCTGGAACGGCATGGGCGACTTCC
CTTGGGAAACAACGATATCTACATGGCGACAGTGGGCGGCATGCGCATGACCGACCCGTCGGCCGATCTAGCCATTCTGA
TGGCAGTGGCATCCGCGTACACCGATATAGCGTTACCCGCCAATATGGTTTTCATCGGCGAGGTTGGGCTGGCGGGCGAT
ATCCGCCGCACCGCCGCCGTGGGCAAGCGCATCTCCGAGGCCGCCCGGCTCGGCTACACGCACGCGGTGATTCCCCCCGA
AGGCGACGACCTGCACCCCGCCGGTATGCACCTGCTGCGTTGCCCGACGGTGGGCAGGGCCCTCGAAGTGCTCTCCGAAG
CACGCAAGATCGAACCGGAAAAGCGCCCAAATCTGCGCTTGGCGCAACAATTTACGGACTGA

Upstream 100 bases:

>100_bases
AAGACCGTGAACTGCCAGGACCGCATCGTCCCGCTGCCTCCCGACTGAACACGGCGGTAGGTTGACTCGACTTGTCACAC
CCGACGGCTAACGTCGCGGT

Downstream 100 bases:

>100_bases
TACCCAGGGTCCGTGAAGCACCCTCGCCATAGTGGGCGTCCGGATCGATGATCACGAAGATGCCCTGCGAGCTGGCCACC
AGTTCTCCATCGATATGCGC

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MAKPRAQYRCSECQHTTAKWVGRCPDCGTWGSVSETAVLSSIGGLGAVRAVAPASAAVPITSIATDTTRHQPTGVSELDR
VLGGGLIPGSVNLLAGEPGVGKSTLLLKVVHQWAASGGRALYISGEESAAQVRLRAERTGCVHDEVYLASESDLHSVLGH
IEAVKPTLAIIDSVQTMSTTDADGVTGGVTQVRAVTTALTMAAKSSGVAMVLVGHVTKDGAIAGPRSLEHLVDVVLHFEG
DKHSALRMVRGIKNRFGAADEVGCFQLRDKGIECVSDPSGLFLEHREKAAAGTAVTVTLDGKRPLLGEVQSLVTTSTNPS
PRRAVSGLDHARSAMVTAVLERHGRLPLGNNDIYMATVGGMRMTDPSADLAILMAVASAYTDIALPANMVFIGEVGLAGD
IRRTAAVGKRISEAARLGYTHAVIPPEGDDLHPAGMHLLRCPTVGRALEVLSEARKIEPEKRPNLRLAQQFTD

Sequences:

>Translated_473_residues
MAKPRAQYRCSECQHTTAKWVGRCPDCGTWGSVSETAVLSSIGGLGAVRAVAPASAAVPITSIATDTTRHQPTGVSELDR
VLGGGLIPGSVNLLAGEPGVGKSTLLLKVVHQWAASGGRALYISGEESAAQVRLRAERTGCVHDEVYLASESDLHSVLGH
IEAVKPTLAIIDSVQTMSTTDADGVTGGVTQVRAVTTALTMAAKSSGVAMVLVGHVTKDGAIAGPRSLEHLVDVVLHFEG
DKHSALRMVRGIKNRFGAADEVGCFQLRDKGIECVSDPSGLFLEHREKAAAGTAVTVTLDGKRPLLGEVQSLVTTSTNPS
PRRAVSGLDHARSAMVTAVLERHGRLPLGNNDIYMATVGGMRMTDPSADLAILMAVASAYTDIALPANMVFIGEVGLAGD
IRRTAAVGKRISEAARLGYTHAVIPPEGDDLHPAGMHLLRCPTVGRALEVLSEARKIEPEKRPNLRLAQQFTD
>Mature_472_residues
AKPRAQYRCSECQHTTAKWVGRCPDCGTWGSVSETAVLSSIGGLGAVRAVAPASAAVPITSIATDTTRHQPTGVSELDRV
LGGGLIPGSVNLLAGEPGVGKSTLLLKVVHQWAASGGRALYISGEESAAQVRLRAERTGCVHDEVYLASESDLHSVLGHI
EAVKPTLAIIDSVQTMSTTDADGVTGGVTQVRAVTTALTMAAKSSGVAMVLVGHVTKDGAIAGPRSLEHLVDVVLHFEGD
KHSALRMVRGIKNRFGAADEVGCFQLRDKGIECVSDPSGLFLEHREKAAAGTAVTVTLDGKRPLLGEVQSLVTTSTNPSP
RRAVSGLDHARSAMVTAVLERHGRLPLGNNDIYMATVGGMRMTDPSADLAILMAVASAYTDIALPANMVFIGEVGLAGDI
RRTAAVGKRISEAARLGYTHAVIPPEGDDLHPAGMHLLRCPTVGRALEVLSEARKIEPEKRPNLRLAQQFTD

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=463, Percent_Identity=39.7408207343413, Blast_Score=340, Evalue=1e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 49619; Mature: 49488

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPRAQYRCSECQHTTAKWVGRCPDCGTWGSVSETAVLSSIGGLGAVRAVAPASAAVPI
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCC
TSIATDTTRHQPTGVSELDRVLGGGLIPGSVNLLAGEPGVGKSTLLLKVVHQWAASGGRA
HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCE
LYISGEESAAQVRLRAERTGCVHDEVYLASESDLHSVLGHIEAVKPTLAIIDSVQTMSTT
EEEECCCCCCCEEEEHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DADGVTGGVTQVRAVTTALTMAAKSSGVAMVLVGHVTKDGAIAGPRSLEHLVDVVLHFEG
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCC
DKHSALRMVRGIKNRFGAADEVGCFQLRDKGIECVSDPSGLFLEHREKAAAGTAVTVTLD
CHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEECCCCCCHHHHHHHHCCCCEEEEEEC
GKRPLLGEVQSLVTTSTNPSPRRAVSGLDHARSAMVTAVLERHGRLPLGNNDIYMATVGG
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
MRMTDPSADLAILMAVASAYTDIALPANMVFIGEVGLAGDIRRTAAVGKRISEAARLGYT
EEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCE
HAVIPPEGDDLHPAGMHLLRCPTVGRALEVLSEARKIEPEKRPNLRLAQQFTD
EEECCCCCCCCCHHCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
AKPRAQYRCSECQHTTAKWVGRCPDCGTWGSVSETAVLSSIGGLGAVRAVAPASAAVPI
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCC
TSIATDTTRHQPTGVSELDRVLGGGLIPGSVNLLAGEPGVGKSTLLLKVVHQWAASGGRA
HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCE
LYISGEESAAQVRLRAERTGCVHDEVYLASESDLHSVLGHIEAVKPTLAIIDSVQTMSTT
EEEECCCCCCCEEEEHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DADGVTGGVTQVRAVTTALTMAAKSSGVAMVLVGHVTKDGAIAGPRSLEHLVDVVLHFEG
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCC
DKHSALRMVRGIKNRFGAADEVGCFQLRDKGIECVSDPSGLFLEHREKAAAGTAVTVTLD
CHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEECCCCCCHHHHHHHHCCCCEEEEEEC
GKRPLLGEVQSLVTTSTNPSPRRAVSGLDHARSAMVTAVLERHGRLPLGNNDIYMATVGG
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
MRMTDPSADLAILMAVASAYTDIALPANMVFIGEVGLAGDIRRTAAVGKRISEAARLGYT
EEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCE
HAVIPPEGDDLHPAGMHLLRCPTVGRALEVLSEARKIEPEKRPNLRLAQQFTD
EEECCCCCCCCCHHCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]