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The map label for this gene is tnpB1 [H]

Identifier: 169627547

GI number: 169627547

Start: 444200

End: 446431

Strand: Direct

Name: tnpB1 [H]

Synonym: MAB_0443

Alternate gene names: 169627547

Gene position: 444200-446431 (Clockwise)

Preceding gene: 169627546

Following gene: 169627548

Centisome position: 8.77

GC content: 61.78

Gene sequence:

>2232_bases
ATGACCCCCACTAACCCTCCAGAAGACCTCACACCGAAATCGGCGGGACCAGATACATCCTGGGCTCACCAATGGGCACA
AGTGCCCCCGCGATGGCGCACGCCGATCTACCGGATCGATACAGCGCCAGCCTCTGAAGTCTTCACACTCAACAACTACT
ACCGCACCCGCAGCAACGGGCAGGGCTATGACTTCACCCCGGCAGGCCCGCCCAGATTCGCCGACGAGCTGGCCTGGTGG
GTGTACATCTGTTGGCGAGAAGGGTTGTGCCGCATCGATCCCGGAGATCTCAAATGGTTCCTGCGGGCCCTGCCGGCAGT
CATCGAGGACTACCAGCGCCGACATGGCCGCCCCCCGCACAGCTTGCTCGATTTGACCGCCTCCGAGATCATGCGACACG
CCGTCGTGTCGTTTGAGCGCCGCAACGGCCGTCTACCCACCGCCGGCTACCGCCGCAACCTGGGCTACACGATCGACAAA
TTGTTCGTGCTACTGGCCGTGCGCTGCAGCGAGGCACCCTGGTGGTCCCGTGATCTGTGGGACCTGCGTATCGACCCGCG
TATCCCGCAACGCGAACATGAACCACGCCACGAACAAGCACTCAAACTCGCCGGAATAGAACCTGATTGGCTGCGGGAAG
GGGTGCGCTTTTGGATGCGTACCGCCTTGACACATCAACTGTTCACCTGGACAACGGTCATCAGCCGCAGCGGCAACCTG
GGCCGGCAACTGGGCACCTTCTGTGTCGCACGCGGCCACCTGCACGATCCGCTGATCAGCACCGACCCCGACACGCTGCG
CGATGTGTTTCTCGATTTCCTGGACCACCTGCGCAGCCCGCAAGCCTCAGCCAACAAACGCGGATTGACCGACTACATGG
TCGCCGAGATCCAATACGAGGTGCAGTCCTTCTACACCTTCATGTACGACCATGCCGCCGAAGCTGCCGCCGCAACCTCA
AACATGCGCTGGAAAGACATCACCGTCGGGCACACCCGCCTATGGGCTCCGGCCTACCAACCCCGTAGAGCCAAGAAATA
CCGCGAACTAACGTGGTACAGCACCGCCGATCTGCAACGGATGCTCACCTATTTGGATGTGCTGGCCGCACGCACCAGCC
AGAGGATCATTCTCAATCAGCCCGACGGCACCATCACCGTAGCGCCAGGTCTGGGCGATCCGCAGGCGGCGCGAATATGG
CTGCTGCAAGCCATGACCGGGCGCCGGGCCTCGGAAATCTTGATGCTTGATCATGATCCGCTCTCAGCCATTCCCGGAGT
GGATCGGCCACCGGATTCTGACAACGAGACATTCGTGGCCCGGCTGCGTTACCAGCAGACCAAAGTCGAGGGCGTCGACC
CCACGATCTTGGTCGAACAGCCCGTGGTCGACATCATCACCGAACAGCAGCGCTGGCTCGCCGAACACCACCCGGACATA
CGTCCCAAGTACCTGTTCGTCGGAATGCTGCATCAGCATCAAGGCCAACGGCCCCGCGCCTACAGTTCCTATCTAAACGC
GCTGCGCAGACTCGATGCCATCCACGCGTTGACCGACTCAGCCGGACACAAGCTGCGGTTCACCCAAACCCACCGGCTCC
GGCACACCCGTGCCACCGAACTACTCAACGACGGAGTGCCCTTTCACGTCGTGCAGCGCTACATGGGGCACAAGAGCCCC
GAGATGACCGCCCGCTATGCCGCCACCCTTGCCGCGACCGCCGAAGCAGAATTCCTCAAACACAAGAAGATCGGTGCCCA
CGGCGCCGACATAGCGATCAGCCCCAATGACATCTACGACATGACCCAACTCGGCAAGCGTACCGACCGAATTTTGCCGA
ACGGGGTGTGCCTGCTGCCGCCGCTAAAATCATGCGACAAGGGCAACGCCTGTTTGTCCTGCGGGCATTTCGCCACCGAC
CGTACGCATCTTGAGGAACTTGTCGCTCAGCGTGCCGCAACCCACACACTGCTGGAGCAACGCCGGGCGCAGGTACTTGC
CCGAACCGGACGTGAGCTGACCGATGAGAACGTTTGGGTTGCCGAACGACTCCGCGAAATCACGTCCCTGAATGCGATTA
TCGGCCGCCTGAGCTCAAAGGAACTAGGTGAGGCCCAGGCCGTTGGCGGGCCAGCCACTGCCGAGCGGATACCGCTGTTG
CCCATAGTCACTCGCGGGTCCCATCAGTCAGCACTCGACAAAGCCCGCCGACCGGACCACCCGACCGGATGA

Upstream 100 bases:

>100_bases
CAAACCACCTTGTCCACCTACGGCTGGGTGACCGAGGACGCCGAAATGCGCAGCGTGGCCGAATGGAGAAACTTCGTCGC
CGGATGGAAGGGCCTGCACG

Downstream 100 bases:

>100_bases
GCACACCGCGTTCCACCGAAGGCCTGCGACGGCACACCACTCAACTACGGGCCAGCACCGCCCGAAAGATCAAACAAGCG
ATCCGGGAGATGAAGAAGAA

Product: putative transposase/integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 743; Mature: 742

Protein sequence:

>743_residues
MTPTNPPEDLTPKSAGPDTSWAHQWAQVPPRWRTPIYRIDTAPASEVFTLNNYYRTRSNGQGYDFTPAGPPRFADELAWW
VYICWREGLCRIDPGDLKWFLRALPAVIEDYQRRHGRPPHSLLDLTASEIMRHAVVSFERRNGRLPTAGYRRNLGYTIDK
LFVLLAVRCSEAPWWSRDLWDLRIDPRIPQREHEPRHEQALKLAGIEPDWLREGVRFWMRTALTHQLFTWTTVISRSGNL
GRQLGTFCVARGHLHDPLISTDPDTLRDVFLDFLDHLRSPQASANKRGLTDYMVAEIQYEVQSFYTFMYDHAAEAAAATS
NMRWKDITVGHTRLWAPAYQPRRAKKYRELTWYSTADLQRMLTYLDVLAARTSQRIILNQPDGTITVAPGLGDPQAARIW
LLQAMTGRRASEILMLDHDPLSAIPGVDRPPDSDNETFVARLRYQQTKVEGVDPTILVEQPVVDIITEQQRWLAEHHPDI
RPKYLFVGMLHQHQGQRPRAYSSYLNALRRLDAIHALTDSAGHKLRFTQTHRLRHTRATELLNDGVPFHVVQRYMGHKSP
EMTARYAATLAATAEAEFLKHKKIGAHGADIAISPNDIYDMTQLGKRTDRILPNGVCLLPPLKSCDKGNACLSCGHFATD
RTHLEELVAQRAATHTLLEQRRAQVLARTGRELTDENVWVAERLREITSLNAIIGRLSSKELGEAQAVGGPATAERIPLL
PIVTRGSHQSALDKARRPDHPTG

Sequences:

>Translated_743_residues
MTPTNPPEDLTPKSAGPDTSWAHQWAQVPPRWRTPIYRIDTAPASEVFTLNNYYRTRSNGQGYDFTPAGPPRFADELAWW
VYICWREGLCRIDPGDLKWFLRALPAVIEDYQRRHGRPPHSLLDLTASEIMRHAVVSFERRNGRLPTAGYRRNLGYTIDK
LFVLLAVRCSEAPWWSRDLWDLRIDPRIPQREHEPRHEQALKLAGIEPDWLREGVRFWMRTALTHQLFTWTTVISRSGNL
GRQLGTFCVARGHLHDPLISTDPDTLRDVFLDFLDHLRSPQASANKRGLTDYMVAEIQYEVQSFYTFMYDHAAEAAAATS
NMRWKDITVGHTRLWAPAYQPRRAKKYRELTWYSTADLQRMLTYLDVLAARTSQRIILNQPDGTITVAPGLGDPQAARIW
LLQAMTGRRASEILMLDHDPLSAIPGVDRPPDSDNETFVARLRYQQTKVEGVDPTILVEQPVVDIITEQQRWLAEHHPDI
RPKYLFVGMLHQHQGQRPRAYSSYLNALRRLDAIHALTDSAGHKLRFTQTHRLRHTRATELLNDGVPFHVVQRYMGHKSP
EMTARYAATLAATAEAEFLKHKKIGAHGADIAISPNDIYDMTQLGKRTDRILPNGVCLLPPLKSCDKGNACLSCGHFATD
RTHLEELVAQRAATHTLLEQRRAQVLARTGRELTDENVWVAERLREITSLNAIIGRLSSKELGEAQAVGGPATAERIPLL
PIVTRGSHQSALDKARRPDHPTG
>Mature_742_residues
TPTNPPEDLTPKSAGPDTSWAHQWAQVPPRWRTPIYRIDTAPASEVFTLNNYYRTRSNGQGYDFTPAGPPRFADELAWWV
YICWREGLCRIDPGDLKWFLRALPAVIEDYQRRHGRPPHSLLDLTASEIMRHAVVSFERRNGRLPTAGYRRNLGYTIDKL
FVLLAVRCSEAPWWSRDLWDLRIDPRIPQREHEPRHEQALKLAGIEPDWLREGVRFWMRTALTHQLFTWTTVISRSGNLG
RQLGTFCVARGHLHDPLISTDPDTLRDVFLDFLDHLRSPQASANKRGLTDYMVAEIQYEVQSFYTFMYDHAAEAAAATSN
MRWKDITVGHTRLWAPAYQPRRAKKYRELTWYSTADLQRMLTYLDVLAARTSQRIILNQPDGTITVAPGLGDPQAARIWL
LQAMTGRRASEILMLDHDPLSAIPGVDRPPDSDNETFVARLRYQQTKVEGVDPTILVEQPVVDIITEQQRWLAEHHPDIR
PKYLFVGMLHQHQGQRPRAYSSYLNALRRLDAIHALTDSAGHKLRFTQTHRLRHTRATELLNDGVPFHVVQRYMGHKSPE
MTARYAATLAATAEAEFLKHKKIGAHGADIAISPNDIYDMTQLGKRTDRILPNGVCLLPPLKSCDKGNACLSCGHFATDR
THLEELVAQRAATHTLLEQRRAQVLARTGRELTDENVWVAERLREITSLNAIIGRLSSKELGEAQAVGGPATAERIPLLP
IVTRGSHQSALDKARRPDHPTG

Specific function: One of three proteins encoded by transposon Tn554 required for its transposition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 84574; Mature: 84443

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTNPPEDLTPKSAGPDTSWAHQWAQVPPRWRTPIYRIDTAPASEVFTLNNYYRTRSNG
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCHHEECCCC
QGYDFTPAGPPRFADELAWWVYICWREGLCRIDPGDLKWFLRALPAVIEDYQRRHGRPPH
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
SLLDLTASEIMRHAVVSFERRNGRLPTAGYRRNLGYTIDKLFVLLAVRCSEAPWWSRDLW
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCE
DLRIDPRIPQREHEPRHEQALKLAGIEPDWLREGVRFWMRTALTHQLFTWTTVISRSGNL
EEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
GRQLGTFCVARGHLHDPLISTDPDTLRDVFLDFLDHLRSPQASANKRGLTDYMVAEIQYE
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
VQSFYTFMYDHAAEAAAATSNMRWKDITVGHTRLWAPAYQPRRAKKYRELTWYSTADLQR
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHCCCHHHHHH
MLTYLDVLAARTSQRIILNQPDGTITVAPGLGDPQAARIWLLQAMTGRRASEILMLDHDP
HHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
LSAIPGVDRPPDSDNETFVARLRYQQTKVEGVDPTILVEQPVVDIITEQQRWLAEHHPDI
HHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCC
RPKYLFVGMLHQHQGQRPRAYSSYLNALRRLDAIHALTDSAGHKLRFTQTHRLRHTRATE
CCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
LLNDGVPFHVVQRYMGHKSPEMTARYAATLAATAEAEFLKHKKIGAHGADIAISPNDIYD
HHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHH
MTQLGKRTDRILPNGVCLLPPLKSCDKGNACLSCGHFATDRTHLEELVAQRAATHTLLEQ
HHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
RRAQVLARTGRELTDENVWVAERLREITSLNAIIGRLSSKELGEAQAVGGPATAERIPLL
HHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCHHCCCCCCCHHCCCCE
PIVTRGSHQSALDKARRPDHPTG
EEEECCCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TPTNPPEDLTPKSAGPDTSWAHQWAQVPPRWRTPIYRIDTAPASEVFTLNNYYRTRSNG
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCHHEECCCC
QGYDFTPAGPPRFADELAWWVYICWREGLCRIDPGDLKWFLRALPAVIEDYQRRHGRPPH
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
SLLDLTASEIMRHAVVSFERRNGRLPTAGYRRNLGYTIDKLFVLLAVRCSEAPWWSRDLW
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCE
DLRIDPRIPQREHEPRHEQALKLAGIEPDWLREGVRFWMRTALTHQLFTWTTVISRSGNL
EEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
GRQLGTFCVARGHLHDPLISTDPDTLRDVFLDFLDHLRSPQASANKRGLTDYMVAEIQYE
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
VQSFYTFMYDHAAEAAAATSNMRWKDITVGHTRLWAPAYQPRRAKKYRELTWYSTADLQR
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHCCCHHHHHH
MLTYLDVLAARTSQRIILNQPDGTITVAPGLGDPQAARIWLLQAMTGRRASEILMLDHDP
HHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
LSAIPGVDRPPDSDNETFVARLRYQQTKVEGVDPTILVEQPVVDIITEQQRWLAEHHPDI
HHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCC
RPKYLFVGMLHQHQGQRPRAYSSYLNALRRLDAIHALTDSAGHKLRFTQTHRLRHTRATE
CCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
LLNDGVPFHVVQRYMGHKSPEMTARYAATLAATAEAEFLKHKKIGAHGADIAISPNDIYD
HHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHH
MTQLGKRTDRILPNGVCLLPPLKSCDKGNACLSCGHFATDRTHLEELVAQRAATHTLLEQ
HHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
RRAQVLARTGRELTDENVWVAERLREITSLNAIIGRLSSKELGEAQAVGGPATAERIPLL
HHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCHHCCCCCCCHHCCCCE
PIVTRGSHQSALDKARRPDHPTG
EEEECCCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]