Click here to switch to the map view.

The map label for this gene is tnpA1 [H]

Identifier: 169627546

GI number: 169627546

Start: 442912

End: 444213

Strand: Direct

Name: tnpA1 [H]

Synonym: MAB_0442

Alternate gene names: 169627546

Gene position: 442912-444213 (Clockwise)

Preceding gene: 169627545

Following gene: 169627547

Centisome position: 8.74

GC content: 64.98

Gene sequence:

>1302_bases
GTGATCTTGTCAACGCCGGCGCGCGCGGTCAGGTCCTCAAGCTGGATCGAGCCCGATCCTGCCGGCAGGCATAAGCAGGC
AGGATCGGGCTCGGCGGTGGCACGCACTCAACGGATCACCCTGACCGGCCGCGCGCACACCTACACCGTCCTGGGACAAG
ACCACCTGCCGATCGCGCCGGTGACCGAGTACCTGCAGTTCCTGCGCGATGATCAAGCATCCCCGAACACCTTGCGTGCC
TACGCCGCAGGCTTAGCGGCGTGGTGGAATCTGCTGGAAGAGACCAACACCGGGTGGACCGACGTTACGACCGCACTGTT
CGGAGAATTCCTCACTTATCTACGTACCGGGGACCTGCCGGGCACCAGCCGCATCGGGCCACCAGCGGTGTGGCTATCGG
CAGCCTCAGTGCAGCAGCGGGCCGCGGCGGTGCTTTCGTTCTACCGCTACCACGCGCATGCGCACAATCTGGACGCTCCG
TATCAACGCCTGTACGGCACCTTGGGTAAGCCGGGACGCGCGCGATATATCCCGCTGCTGGCCGGGGTGGGACGCCCCGT
GCGCAAACCACGGCCGATCTACCGGGTACGAGGCGGAAACACCAGCCGCACACCGGTGCTGCTACCAGAGCAGGTACGCA
CAATTTTGGACTTGTGTGCTGTGCAGGACCGCAGTGGGCAATGGAGCGGGTCACCGGCGGCGCTGCGCGATCGGCTGCTG
TTCGCGCTGCTGGCCGAGACCGGGATGCGAATGGGTGAGGCATTGACATTGCGGCACCACGACGTACATATCGGTGCCGG
CGGCACCCCCTGGGTGGAAGTCGTTCCCCGTCAAGACCATCCGGCCGGGGTGCGGGTCAAAGGCGGACACCGCCGTATCT
ACGTGGGTGATGATCTGGAAGCGCTGTATTCGGCGTACGTGTGGCATCTGGTCGACACCGGCGCCCATGAGCACGTGCCG
GACCTTGATACGCACTTCGTGTTCGTCAACCTCGCCGGCGGCCAACTGTACGCGCCGACACGCCCCGAGACCGTGTACGC
CAAGGTCCGCAGCATCAGCCACAACGCCAAAGGCGCCGTGCCGAAGGACTGGTCTCCGCACTGGATGCGCCACACCCATG
CCACCGCGCTGCTGTTATCAGGTGTGCCACCGCACGTGGTGATGCGCCGGCTCGGGCACCAAGACATCCAAACCACCTTG
TCCACCTACGGCTGGGTGACCGAGGACGCCGAAATGCGCAGCGTGGCCGAATGGAGAAACTTCGTCGCCGGATGGAAGGG
CCTGCACGATGACCCCCACTAA

Upstream 100 bases:

>100_bases
GCTGTCCATGACCTGATTTTCCCGACCGACTTGCTCGCCGATTTCCTCACCGGCCAGCGCGGAACACCACCGAAATCGGC
GGCGCAGTCTGCGCGCGAGC

Downstream 100 bases:

>100_bases
CCCTCCAGAAGACCTCACACCGAAATCGGCGGGACCAGATACATCCTGGGCTCACCAATGGGCACAAGTGCCCCCGCGAT
GGCGCACGCCGATCTACCGG

Product: putative transposase/integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MILSTPARAVRSSSWIEPDPAGRHKQAGSGSAVARTQRITLTGRAHTYTVLGQDHLPIAPVTEYLQFLRDDQASPNTLRA
YAAGLAAWWNLLEETNTGWTDVTTALFGEFLTYLRTGDLPGTSRIGPPAVWLSAASVQQRAAAVLSFYRYHAHAHNLDAP
YQRLYGTLGKPGRARYIPLLAGVGRPVRKPRPIYRVRGGNTSRTPVLLPEQVRTILDLCAVQDRSGQWSGSPAALRDRLL
FALLAETGMRMGEALTLRHHDVHIGAGGTPWVEVVPRQDHPAGVRVKGGHRRIYVGDDLEALYSAYVWHLVDTGAHEHVP
DLDTHFVFVNLAGGQLYAPTRPETVYAKVRSISHNAKGAVPKDWSPHWMRHTHATALLLSGVPPHVVMRRLGHQDIQTTL
STYGWVTEDAEMRSVAEWRNFVAGWKGLHDDPH

Sequences:

>Translated_433_residues
MILSTPARAVRSSSWIEPDPAGRHKQAGSGSAVARTQRITLTGRAHTYTVLGQDHLPIAPVTEYLQFLRDDQASPNTLRA
YAAGLAAWWNLLEETNTGWTDVTTALFGEFLTYLRTGDLPGTSRIGPPAVWLSAASVQQRAAAVLSFYRYHAHAHNLDAP
YQRLYGTLGKPGRARYIPLLAGVGRPVRKPRPIYRVRGGNTSRTPVLLPEQVRTILDLCAVQDRSGQWSGSPAALRDRLL
FALLAETGMRMGEALTLRHHDVHIGAGGTPWVEVVPRQDHPAGVRVKGGHRRIYVGDDLEALYSAYVWHLVDTGAHEHVP
DLDTHFVFVNLAGGQLYAPTRPETVYAKVRSISHNAKGAVPKDWSPHWMRHTHATALLLSGVPPHVVMRRLGHQDIQTTL
STYGWVTEDAEMRSVAEWRNFVAGWKGLHDDPH
>Mature_433_residues
MILSTPARAVRSSSWIEPDPAGRHKQAGSGSAVARTQRITLTGRAHTYTVLGQDHLPIAPVTEYLQFLRDDQASPNTLRA
YAAGLAAWWNLLEETNTGWTDVTTALFGEFLTYLRTGDLPGTSRIGPPAVWLSAASVQQRAAAVLSFYRYHAHAHNLDAP
YQRLYGTLGKPGRARYIPLLAGVGRPVRKPRPIYRVRGGNTSRTPVLLPEQVRTILDLCAVQDRSGQWSGSPAALRDRLL
FALLAETGMRMGEALTLRHHDVHIGAGGTPWVEVVPRQDHPAGVRVKGGHRRIYVGDDLEALYSAYVWHLVDTGAHEHVP
DLDTHFVFVNLAGGQLYAPTRPETVYAKVRSISHNAKGAVPKDWSPHWMRHTHATALLLSGVPPHVVMRRLGHQDIQTTL
STYGWVTEDAEMRSVAEWRNFVAGWKGLHDDPH

Specific function: One of three proteins encoded by transposon Tn554 required for its transposition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47920; Mature: 47920

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSTPARAVRSSSWIEPDPAGRHKQAGSGSAVARTQRITLTGRAHTYTVLGQDHLPIAP
CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEECCCEEEEEECCCCCCCCH
VTEYLQFLRDDQASPNTLRAYAAGLAAWWNLLEETNTGWTDVTTALFGEFLTYLRTGDLP
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
GTSRIGPPAVWLSAASVQQRAAAVLSFYRYHAHAHNLDAPYQRLYGTLGKPGRARYIPLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEHHH
AGVGRPVRKPRPIYRVRGGNTSRTPVLLPEQVRTILDLCAVQDRSGQWSGSPAALRDRLL
HCCCCCCCCCCCEEEECCCCCCCCCEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
FALLAETGMRMGEALTLRHHDVHIGAGGTPWVEVVPRQDHPAGVRVKGGHRRIYVGDDLE
HHHHHHHHHHCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCEEEECCCEEEEECCCHH
ALYSAYVWHLVDTGAHEHVPDLDTHFVFVNLAGGQLYAPTRPETVYAKVRSISHNAKGAV
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHCCCCCCCC
PKDWSPHWMRHTHATALLLSGVPPHVVMRRLGHQDIQTTLSTYGWVTEDAEMRSVAEWRN
CCCCCCHHHHHHHHHHHEECCCCHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
FVAGWKGLHDDPH
HHHHHCCCCCCCC
>Mature Secondary Structure
MILSTPARAVRSSSWIEPDPAGRHKQAGSGSAVARTQRITLTGRAHTYTVLGQDHLPIAP
CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEEEEEEECCCEEEEEECCCCCCCCH
VTEYLQFLRDDQASPNTLRAYAAGLAAWWNLLEETNTGWTDVTTALFGEFLTYLRTGDLP
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
GTSRIGPPAVWLSAASVQQRAAAVLSFYRYHAHAHNLDAPYQRLYGTLGKPGRARYIPLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEHHH
AGVGRPVRKPRPIYRVRGGNTSRTPVLLPEQVRTILDLCAVQDRSGQWSGSPAALRDRLL
HCCCCCCCCCCCEEEECCCCCCCCCEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
FALLAETGMRMGEALTLRHHDVHIGAGGTPWVEVVPRQDHPAGVRVKGGHRRIYVGDDLE
HHHHHHHHHHCCCEEEEEEEEEEECCCCCCEEEEEECCCCCCCEEEECCCEEEEECCCHH
ALYSAYVWHLVDTGAHEHVPDLDTHFVFVNLAGGQLYAPTRPETVYAKVRSISHNAKGAV
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHCCCCCCCC
PKDWSPHWMRHTHATALLLSGVPPHVVMRRLGHQDIQTTLSTYGWVTEDAEMRSVAEWRN
CCCCCCHHHHHHHHHHHEECCCCHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
FVAGWKGLHDDPH
HHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]