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The map label for this gene is hofB [C]

Identifier: 169627537

GI number: 169627537

Start: 434647

End: 435723

Strand: Direct

Name: hofB [C]

Synonym: MAB_0433

Alternate gene names: 169627537

Gene position: 434647-435723 (Clockwise)

Preceding gene: 169627536

Following gene: 169627540

Centisome position: 8.58

GC content: 66.2

Gene sequence:

>1077_bases
ATGACCGGATCATTGATCGATCGGGTACGTGAGCGCCTTGCCGCGGACAACGTGGCGCTGCGCCCCACCGCGGTCGCGGC
CGCGATACGCGCCGAATCCGGTGGAGTGCTTGGTGATAGCGATGTGTTGCACAACATAAAAGAACTGCAGAGTGAGCTGT
CCGGTGCGGGCATTCTGGAACCATTGTTGTGCGCCGACGACACAACGGACGTGTTGGTCACCGCGCCGGATCGTGTCTGG
GTCGATGACGGCCACGGATTGCGTCTCACCGCGGTGCGCTTCACCGACGAGGCCGCGGTACGCCGACTGGCACAGCGATT
GGCGCTCGCGGTGGGACGCCGTCTCGACGACGCGCAGCCTTTTGTCGACGGGCAGCTGCTGGACGTGGGTCCGCCGCGCT
CGGTGGTGCGCCTTCACGCGGTGCTCGCCCCCATCGCCGCAGCTGGCACATGTATCTCGCTACGTGTGTTGCGCCCCATG
GCCAAAGGCCTGGACCAGCTGATCGCCGACGGCACCGTCCCCGAGGATGCCGGCAGATTACTGCGCGGGATGCTGGCGGC
CCGGCTGGCCTTTCTTGTCACGGGCGGCACGGGCGCGGGCAAGACTACGTTGTTGTCCGCGCTACTCGGGGCGGTCGACC
CGACCGAGCGCATTATCTGTGCCGAGGATGCCGCAGAGCTCGCGCCGCGTCACCCGCATGTGGTCAGCCTGGCCGCGCGC
GCTGTCAACATCGAGGGTGTTGGCGAGGTGACGTTGCGTCAGTTGGTGCGTCAGGCATTGCGGATGCGTCCGGACCGAAT
TGTGGTGGGTGAGGTGCGTGGTGCCGAGGTGGTTGAGCTGCTCACCGCACTCAACACCGGCCACGACGGTGGCGCGGGCA
CCGTTCACGCGAACGCCCCCGCGGAGGTGCCGGCGCGGTTGGAGGCCCTCGGAGCGCTCGGTGGGCTCGACCGCGCCGCA
CTGCACTCGCAGTTCGCCGCGGCCATTTTATCTGTAACAGATGCCAGGGTGTGTATGACTGTCACCGACGTGACCTATCG
GGTCGGCAAGGACCGTTGTTCACATGGTTATCTGTAG

Upstream 100 bases:

>100_bases
TGGACAAAGGCGGCCTGCGACTGTCACGCCGCTCACCCTTGGCGGCCGCCGCGCAGTCCGTGTTGTCGCTGGTGTCGCAG
GATGGGAAGGCGTCGGCGGC

Downstream 100 bases:

>100_bases
TGGTGTTACTAGTGGTAACGGCCGTTTATCAGTTGGCGTGATGAAGTGTTGAGTATCTATGTATTTCAGGGTTTTTGAGC
ACATGCCGCCAGCGGAAGTA

Product: Type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MTGSLIDRVRERLAADNVALRPTAVAAAIRAESGGVLGDSDVLHNIKELQSELSGAGILEPLLCADDTTDVLVTAPDRVW
VDDGHGLRLTAVRFTDEAAVRRLAQRLALAVGRRLDDAQPFVDGQLLDVGPPRSVVRLHAVLAPIAAAGTCISLRVLRPM
AKGLDQLIADGTVPEDAGRLLRGMLAARLAFLVTGGTGAGKTTLLSALLGAVDPTERIICAEDAAELAPRHPHVVSLAAR
AVNIEGVGEVTLRQLVRQALRMRPDRIVVGEVRGAEVVELLTALNTGHDGGAGTVHANAPAEVPARLEALGALGGLDRAA
LHSQFAAAILSVTDARVCMTVTDVTYRVGKDRCSHGYL

Sequences:

>Translated_358_residues
MTGSLIDRVRERLAADNVALRPTAVAAAIRAESGGVLGDSDVLHNIKELQSELSGAGILEPLLCADDTTDVLVTAPDRVW
VDDGHGLRLTAVRFTDEAAVRRLAQRLALAVGRRLDDAQPFVDGQLLDVGPPRSVVRLHAVLAPIAAAGTCISLRVLRPM
AKGLDQLIADGTVPEDAGRLLRGMLAARLAFLVTGGTGAGKTTLLSALLGAVDPTERIICAEDAAELAPRHPHVVSLAAR
AVNIEGVGEVTLRQLVRQALRMRPDRIVVGEVRGAEVVELLTALNTGHDGGAGTVHANAPAEVPARLEALGALGGLDRAA
LHSQFAAAILSVTDARVCMTVTDVTYRVGKDRCSHGYL
>Mature_357_residues
TGSLIDRVRERLAADNVALRPTAVAAAIRAESGGVLGDSDVLHNIKELQSELSGAGILEPLLCADDTTDVLVTAPDRVWV
DDGHGLRLTAVRFTDEAAVRRLAQRLALAVGRRLDDAQPFVDGQLLDVGPPRSVVRLHAVLAPIAAAGTCISLRVLRPMA
KGLDQLIADGTVPEDAGRLLRGMLAARLAFLVTGGTGAGKTTLLSALLGAVDPTERIICAEDAAELAPRHPHVVSLAARA
VNIEGVGEVTLRQLVRQALRMRPDRIVVGEVRGAEVVELLTALNTGHDGGAGTVHANAPAEVPARLEALGALGGLDRAAL
HSQFAAAILSVTDARVCMTVTDVTYRVGKDRCSHGYL

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 37476; Mature: 37344

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSLIDRVRERLAADNVALRPTAVAAAIRAESGGVLGDSDVLHNIKELQSELSGAGILE
CCCHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PLLCADDTTDVLVTAPDRVWVDDGHGLRLTAVRFTDEAAVRRLAQRLALAVGRRLDDAQP
HHHCCCCCCCEEEECCCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCC
FVDGQLLDVGPPRSVVRLHAVLAPIAAAGTCISLRVLRPMAKGLDQLIADGTVPEDAGRL
CCCCEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LRGMLAARLAFLVTGGTGAGKTTLLSALLGAVDPTERIICAEDAAELAPRHPHVVSLAAR
HHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHHCCCCCHHHHHHHH
AVNIEGVGEVTLRQLVRQALRMRPDRIVVGEVRGAEVVELLTALNTGHDGGAGTVHANAP
HCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCC
AEVPARLEALGALGGLDRAALHSQFAAAILSVTDARVCMTVTDVTYRVGKDRCSHGYL
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCHHHCCCCC
>Mature Secondary Structure 
TGSLIDRVRERLAADNVALRPTAVAAAIRAESGGVLGDSDVLHNIKELQSELSGAGILE
CCHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PLLCADDTTDVLVTAPDRVWVDDGHGLRLTAVRFTDEAAVRRLAQRLALAVGRRLDDAQP
HHHCCCCCCCEEEECCCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCC
FVDGQLLDVGPPRSVVRLHAVLAPIAAAGTCISLRVLRPMAKGLDQLIADGTVPEDAGRL
CCCCEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LRGMLAARLAFLVTGGTGAGKTTLLSALLGAVDPTERIICAEDAAELAPRHPHVVSLAAR
HHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHHCCCCCHHHHHHHH
AVNIEGVGEVTLRQLVRQALRMRPDRIVVGEVRGAEVVELLTALNTGHDGGAGTVHANAP
HCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCC
AEVPARLEALGALGGLDRAALHSQFAAAILSVTDARVCMTVTDVTYRVGKDRCSHGYL
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]