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The map label for this gene is ycdM [C]

Identifier: 169627470

GI number: 169627470

Start: 362594

End: 363481

Strand: Direct

Name: ycdM [C]

Synonym: MAB_0366

Alternate gene names: 169627470

Gene position: 362594-363481 (Clockwise)

Preceding gene: 169627465

Following gene: 169627472

Centisome position: 7.16

GC content: 67.34

Gene sequence:

>888_bases
GTGAAGATCGGTGTCGTGGCTCCGGTGGAGCTCGGGGTAACCGCGGAGCCCGACAAGATCCTCGAATTCGCGCGTGCCGC
AGAGCGGCTGGGGTTCAGTGAGATCTCCGTGGTGGAGCACGCGGTTGTCATCGGAGATACGCAGAGCACGTATCCCTATT
CGCCGACCGGACAGTCGCATCTACCCGACGACATTGATATCCCCGATCCGTTGGAGCTGCTGTCCTTTGTCGCGGCCGCT
ACTACCACCCTGGGATTATCCACCGGCGTACTGGTGCTACCCGATCACCACCCCGTGGTGCTGGCCAAACGTCTGGCCAC
CCTGGACCGGCTCAGTCGCGGGCGGTTGCGGATCTGCGCGGGCGTCGGATGGATGCGTGAGGAGATCGAGGCGTGCGGCG
GTGATTTTGACCGCCGGGGCCGCGCAGCCGACGAAGCCATCGCGGTGATGCGCGCGCTGTGGTCCACCGATGGCCCCACT
AGTCACGACGGGGAGTTCTACAGCTTCCGGAACGCCTATTCCTATCCCAAACCGGTTCGACCACAGGGTGTTCCGCTCTA
CATCGGCGGGCACAGCAAGGCGGCGGCACGACGGGCCGGGCGCCTGGGTAGCGGATTTCAGCCGCTGGGACTGGTTGGCG
ACGATCTGACCGCCGCGGTGGGCGTGATGCGGGCGGCCGCCGTGGATGCGGGACGCGATCCGCGGGGCCTCGACCTGGTA
CTGGGCCATGGCCTGCACCGAGTGGACCAGGCGGCGCTGGATCAGGCCGCGCACGCGGGAGCCGGGCGGATGCTGCTCTC
GGCCTCTCGACGTGCCACCACCCTGGAGGCGGTTCTCGAGGAGATGGCCGGGTGCGCTACCCGACTCGAACTGGGCGGTC
CTCGCTGA

Upstream 100 bases:

>100_bases
TCACGGCCACCATCACGCCCAAACGCGACGTCGACCGGAGGTCGGTGATCAGGCTCATTTGCGAGATCCTATGGTGACAC
CTGATGTCAGGAGGCTGCTT

Downstream 100 bases:

>100_bases
AGACCACCACCGGTTCGCGGCGGGTGAAGACCCAACCCGTCGGCCCGCGCTGGTAGTTGTCGAGGTACCGCACCGCCATG
GTGTTGTCGCGGTACTCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKIGVVAPVELGVTAEPDKILEFARAAERLGFSEISVVEHAVVIGDTQSTYPYSPTGQSHLPDDIDIPDPLELLSFVAAA
TTTLGLSTGVLVLPDHHPVVLAKRLATLDRLSRGRLRICAGVGWMREEIEACGGDFDRRGRAADEAIAVMRALWSTDGPT
SHDGEFYSFRNAYSYPKPVRPQGVPLYIGGHSKAAARRAGRLGSGFQPLGLVGDDLTAAVGVMRAAAVDAGRDPRGLDLV
LGHGLHRVDQAALDQAAHAGAGRMLLSASRRATTLEAVLEEMAGCATRLELGGPR

Sequences:

>Translated_295_residues
MKIGVVAPVELGVTAEPDKILEFARAAERLGFSEISVVEHAVVIGDTQSTYPYSPTGQSHLPDDIDIPDPLELLSFVAAA
TTTLGLSTGVLVLPDHHPVVLAKRLATLDRLSRGRLRICAGVGWMREEIEACGGDFDRRGRAADEAIAVMRALWSTDGPT
SHDGEFYSFRNAYSYPKPVRPQGVPLYIGGHSKAAARRAGRLGSGFQPLGLVGDDLTAAVGVMRAAAVDAGRDPRGLDLV
LGHGLHRVDQAALDQAAHAGAGRMLLSASRRATTLEAVLEEMAGCATRLELGGPR
>Mature_295_residues
MKIGVVAPVELGVTAEPDKILEFARAAERLGFSEISVVEHAVVIGDTQSTYPYSPTGQSHLPDDIDIPDPLELLSFVAAA
TTTLGLSTGVLVLPDHHPVVLAKRLATLDRLSRGRLRICAGVGWMREEIEACGGDFDRRGRAADEAIAVMRALWSTDGPT
SHDGEFYSFRNAYSYPKPVRPQGVPLYIGGHSKAAARRAGRLGSGFQPLGLVGDDLTAAVGVMRAAAVDAGRDPRGLDLV
LGHGLHRVDQAALDQAAHAGAGRMLLSASRRATTLEAVLEEMAGCATRLELGGPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 31215; Mature: 31215

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGVVAPVELGVTAEPDKILEFARAAERLGFSEISVVEHAVVIGDTQSTYPYSPTGQSH
CCCCEECCEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCCCCCCCCCCCC
LPDDIDIPDPLELLSFVAAATTTLGLSTGVLVLPDHHPVVLAKRLATLDRLSRGRLRICA
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC
GVGWMREEIEACGGDFDRRGRAADEAIAVMRALWSTDGPTSHDGEFYSFRNAYSYPKPVR
CCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEHHCCCCCCCCCC
PQGVPLYIGGHSKAAARRAGRLGSGFQPLGLVGDDLTAAVGVMRAAAVDAGRDPRGLDLV
CCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
LGHGLHRVDQAALDQAAHAGAGRMLLSASRRATTLEAVLEEMAGCATRLELGGPR
HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKIGVVAPVELGVTAEPDKILEFARAAERLGFSEISVVEHAVVIGDTQSTYPYSPTGQSH
CCCCEECCEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCCCCCCCCCCCC
LPDDIDIPDPLELLSFVAAATTTLGLSTGVLVLPDHHPVVLAKRLATLDRLSRGRLRICA
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEC
GVGWMREEIEACGGDFDRRGRAADEAIAVMRALWSTDGPTSHDGEFYSFRNAYSYPKPVR
CCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEHHCCCCCCCCCC
PQGVPLYIGGHSKAAARRAGRLGSGFQPLGLVGDDLTAAVGVMRAAAVDAGRDPRGLDLV
CCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
LGHGLHRVDQAALDQAAHAGAGRMLLSASRRATTLEAVLEEMAGCATRLELGGPR
HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]