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The map label for this gene is ydfH [C]

Identifier: 169627173

GI number: 169627173

Start: 65270

End: 65908

Strand: Direct

Name: ydfH [C]

Synonym: MAB_0068

Alternate gene names: 169627173

Gene position: 65270-65908 (Clockwise)

Preceding gene: 169627172

Following gene: 169627174

Centisome position: 1.29

GC content: 68.08

Gene sequence:

>639_bases
ATGATTCGTACGGTGGCCATCTCCGCGAGTGAAGAGGCCTACCGCTCCGTCAAGGAGAGCATCCTCAACGGTGACATTCC
TGGCGGCGAACTGCTGAGCGAAGGGGAGATCTCCGCGCGCATGGGGTGCAGCCGCACCCCCGTACGCGAGGCATTCCTGC
GGCTGGAAACCGAAGGCTGGCTGCGGCTCTATCCCAAACGCGGAGCGCTGGTGGTGCCCATCACCCCCGAGGAGCGCCGT
CATGTCGTCGACGCCCGCCGCGTCATCGAGGGAGCTGCGGCGGCACGCATCGCCGAGCGGGGCGCACCTCAGTCGTTGCT
GTCCGACCTCTCGGCGCTCATCGAGGTGCAGTTGGGCCGCGCGGCGCAGGGCGATGCCGCGGGTTTCGCGGCGGCCGATG
TGGACTTTCACCGTGCGATCGTGGCCAAGCTGGGCAACCCGCTGTTGGAGAACTTCTATGACTCCCTAAGGGAGCGCCAG
CGCCGGATGGCGGCCGCGGCCATCGGAGTGGACCCGGTGCGGGTCGCGCGATCGGTCGCCGGGCACCGTGCGCTGGTGGA
CGCGCTGGCGGCGGGCGACGCGGCCCGTTTCAGCACCGAATTGGTCGAGCACATGAAAGTGGTGACGGAAGTTGACTAG

Upstream 100 bases:

>100_bases
GACCGGGCGGCAGCCGTCGACGTGACGCTGAACACCCTGTGAGGTGCGACTTTCGGCTTGTGGGGGCCACCGGCGGTGAG
CTTAGATACATGTTGTGTCT

Downstream 100 bases:

>100_bases
TCGTCTGCCCTCACGCCTCGCGCCTTGGCAGCGTGTCGGTCTGGCGATGTTCGGAATTGCTTGGGGTGGTAACGAATTCA
CTCCCCTGCTGGTGATGTAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORFX [H]

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MIRTVAISASEEAYRSVKESILNGDIPGGELLSEGEISARMGCSRTPVREAFLRLETEGWLRLYPKRGALVVPITPEERR
HVVDARRVIEGAAAARIAERGAPQSLLSDLSALIEVQLGRAAQGDAAGFAAADVDFHRAIVAKLGNPLLENFYDSLRERQ
RRMAAAAIGVDPVRVARSVAGHRALVDALAAGDAARFSTELVEHMKVVTEVD

Sequences:

>Translated_212_residues
MIRTVAISASEEAYRSVKESILNGDIPGGELLSEGEISARMGCSRTPVREAFLRLETEGWLRLYPKRGALVVPITPEERR
HVVDARRVIEGAAAARIAERGAPQSLLSDLSALIEVQLGRAAQGDAAGFAAADVDFHRAIVAKLGNPLLENFYDSLRERQ
RRMAAAAIGVDPVRVARSVAGHRALVDALAAGDAARFSTELVEHMKVVTEVD
>Mature_212_residues
MIRTVAISASEEAYRSVKESILNGDIPGGELLSEGEISARMGCSRTPVREAFLRLETEGWLRLYPKRGALVVPITPEERR
HVVDARRVIEGAAAARIAERGAPQSLLSDLSALIEVQLGRAAQGDAAGFAAADVDFHRAIVAKLGNPLLENFYDSLRERQ
RRMAAAAIGVDPVRVARSVAGHRALVDALAAGDAARFSTELVEHMKVVTEVD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=205, Percent_Identity=26.8292682926829, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 22848; Mature: 22848

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTVAISASEEAYRSVKESILNGDIPGGELLSEGEISARMGCSRTPVREAFLRLETEGW
CCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHCCCCCCHHHHHHHHHCCCCC
LRLYPKRGALVVPITPEERRHVVDARRVIEGAAAARIAERGAPQSLLSDLSALIEVQLGR
EEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
AAQGDAAGFAAADVDFHRAIVAKLGNPLLENFYDSLRERQRRMAAAAIGVDPVRVARSVA
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
GHRALVDALAAGDAARFSTELVEHMKVVTEVD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRTVAISASEEAYRSVKESILNGDIPGGELLSEGEISARMGCSRTPVREAFLRLETEGW
CCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHCCCCCCHHHHHHHHHCCCCC
LRLYPKRGALVVPITPEERRHVVDARRVIEGAAAARIAERGAPQSLLSDLSALIEVQLGR
EEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
AAQGDAAGFAAADVDFHRAIVAKLGNPLLENFYDSLRERQRRMAAAAIGVDPVRVARSVA
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
GHRALVDALAAGDAARFSTELVEHMKVVTEVD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8672817 [H]