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The map label for this gene is ydeS [H]

Identifier: 16767836

GI number: 16767836

Start: 4852849

End: 4853394

Strand: Reverse

Name: ydeS [H]

Synonym: STM4595

Alternate gene names: 16767836

Gene position: 4853394-4852849 (Counterclockwise)

Preceding gene: 16767837

Following gene: 16767835

Centisome position: 99.92

GC content: 50.18

Gene sequence:

>546_bases
ATGTTTAATAAGAAAATAATCATCCTGGCAATGTTAACTGCCGTAGCATCCACACCGGTATTTGCCCAGAACACGATTAC
GTTCAATGGCAAAATTTACGATCAGGCGTGTACGGTTCAGGTGAATGGCTCCACGGATACCACCATTGATTTGGGTAATT
ACAGCAAAGAACGCATCGCGGAAAAAGGCGCCACAACCGATTACGTGCCGTTTACCGTAAGCCTGGTTAGCTGCCCGGAA
GCAGGGACTGGCGTACCAACCCAAGCCATGTTCCGCTTCCACGGCGCAACAGATGATTCTAACCCAACGTACTTCAAAAA
CGCGGACGAAGGATCGGAAACGGGCGCCGCGGGTGTCGGTATTTCTATTCAGAACGCTTCACATAGCGATGTGACAGATA
ACACGGATGATGCCGCAGTAAACCTGCCAACCGACGGCTCGACAGCAGACTTTACCTATTACGCCGCCATGGCAAACGAT
GGTTCCGCAACCGTAACCGGTGGAGATGTTAGCACTCAGGTTACGTATACCGTTTCGTATCAGTAA

Upstream 100 bases:

>100_bases
ATCTACAGAACAGAAAGAAGCGCATACAGAGTAAAATATAATATTTTATTTTATATGGCTATCTTTATTTTTCAGCGAAT
AGAATCAGGCAACAATTAAT

Downstream 100 bases:

>100_bases
GGCATTCTCATCCTGATGTGGACAGGCAGGATGCCAGTCCATAGCGTAAAACATCTTTACAGAGTAAAAAATGAAACACA
TAAAGAAATCCGTGTTGGCC

Product: fimbrial chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MFNKKIIILAMLTAVASTPVFAQNTITFNGKIYDQACTVQVNGSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPE
AGTGVPTQAMFRFHGATDDSNPTYFKNADEGSETGAAGVGISIQNASHSDVTDNTDDAAVNLPTDGSTADFTYYAAMAND
GSATVTGGDVSTQVTYTVSYQ

Sequences:

>Translated_181_residues
MFNKKIIILAMLTAVASTPVFAQNTITFNGKIYDQACTVQVNGSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPE
AGTGVPTQAMFRFHGATDDSNPTYFKNADEGSETGAAGVGISIQNASHSDVTDNTDDAAVNLPTDGSTADFTYYAAMAND
GSATVTGGDVSTQVTYTVSYQ
>Mature_181_residues
MFNKKIIILAMLTAVASTPVFAQNTITFNGKIYDQACTVQVNGSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPE
AGTGVPTQAMFRFHGATDDSNPTYFKNADEGSETGAAGVGISIQNASHSDVTDNTDDAAVNLPTDGSTADFTYYAAMAND
GSATVTGGDVSTQVTYTVSYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787781, Length=178, Percent_Identity=30.3370786516854, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1790773, Length=184, Percent_Identity=29.8913043478261, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18962; Mature: 18962

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNKKIIILAMLTAVASTPVFAQNTITFNGKIYDQACTVQVNGSTDTTIDLGNYSKERIA
CCCCCEEHEEEHHHHHCCCEEECEEEEECCEEECCEEEEEECCCCCCEEECCCCCHHHHH
EKGATTDYVPFTVSLVSCPEAGTGVPTQAMFRFHGATDDSNPTYFKNADEGSETGAAGVG
HCCCCCCCCEEEEEEEECCCCCCCCCHHHEEEEECCCCCCCCCEEECCCCCCCCCCCEEE
ISIQNASHSDVTDNTDDAAVNLPTDGSTADFTYYAAMANDGSATVTGGDVSTQVTYTVSY
EEEECCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCEEEECCCCEEEEEEEEEE
Q
C
>Mature Secondary Structure
MFNKKIIILAMLTAVASTPVFAQNTITFNGKIYDQACTVQVNGSTDTTIDLGNYSKERIA
CCCCCEEHEEEHHHHHCCCEEECEEEEECCEEECCEEEEEECCCCCCEEECCCCCHHHHH
EKGATTDYVPFTVSLVSCPEAGTGVPTQAMFRFHGATDDSNPTYFKNADEGSETGAAGVG
HCCCCCCCCEEEEEEEECCCCCCCCCHHHEEEEECCCCCCCCCEEECCCCCCCCCCCEEE
ISIQNASHSDVTDNTDDAAVNLPTDGSTADFTYYAAMANDGSATVTGGDVSTQVTYTVSY
EEEECCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEEECCCCEEEECCCCEEEEEEEEEE
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]