| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is sthB [H]
Identifier: 16767834
GI number: 16767834
Start: 4849512
End: 4852049
Strand: Reverse
Name: sthB [H]
Synonym: STM4593
Alternate gene names: 16767834
Gene position: 4852049-4849512 (Counterclockwise)
Preceding gene: 16767835
Following gene: 16767833
Centisome position: 99.89
GC content: 47.2
Gene sequence:
>2538_bases GTGCAATTCTCCAGAGTAGAGCCCCGTTCTCAATTAGCGTTATCGTTTCTCTTTATATGCTGTTCCATAAAACCAGCGTT AGCGCATGATCATTTTAATCCATTATCGTTGGAAAATGATGAACCGGGCGTGGAGAATGTCGATCTATCGGTTTTCGAAA AGGGGGGGCAGGCAGAAGGCACCTATAATGTTGATATTTATATTAATAACACCAGTGTTGAAACAAAAAATATTGCCTTT AAAAATAAAAAATCAGCAGATAATAAGCTCTCCCTACAGCCGTGTCTTAGCGTTGAACAACTCAAGCAGTGGGGCGTAAA AACAGAAAACTTCCCCGAGCTTAAAAATGACCCAAACGGGTGTACCGATCTTAGTCTGCTGGCTGGCGCTGTAGCAAAGT TTAATGTCATCGGTAACCGGCTGGATTTAGCGATCCCTCAAATCGCGTTGATCGCCGACCCGCGAGAATTCGTCCCTACC AGCGAATGGGATGAAGGCATTAATGCTTTTTTGCTGAACTACAGTTTTACCGGATCGCAGGATCACGATATTGATGAAAA CCGGACGGAAAATAGCGAATACGCTAACCTGCGCCCTGGTATTAACATTGGCGCATGGCGTTTTCGTAACTACTCAACCT GGAATCATGATAGCGATGGGCAAAATAGCTGGGATTCTGCCTACACCTATGTTTCTCGCGATATCGAATTTTTAAAAGGA CAGCTGATCGCCGGGGAAAATAACACGCCCGCGGACGTCTTTGACAGTATTTCATTTAAGGGCGTACAGATCTCTTCTGA TGACGATATGTTGCCGGACAGTATGAAAGGGTTCGCCCCGGTCATTCGCGGGGTGGCCAAAAGCAGCGCGCAGGTAACCG TTGAACAAAACGGTTATACCATCTACAAAACTAACGTTCCGGCGGGTCCATTCGCCATCAACGATCTTTATCCAACCGGC GGTTCGGGCGACCTGTACGTCACCATCAAAGAATCCGATGGTTCTGAACAGCATTTCATTGTGCCCTACGCCAGCGTTCC GGTATTACAGCGTGAAGGCCACCTGAAATACGACCTGACGGTAGGCCGCACGCGTTCATCAGATACGCATTCCGCGCAAC AGAACTTCGCTGAACTGACGGCCTTATACGGATTAGCAGGCGGCATAACCGCCTATGGCGGAATAGAGAGTACGCTGAGC AATGATGTTTATCATGCGGCGCTCATCGGGACAGGCTTAAACCTTGGCGATCTGGGCGCATTGTCTTTAGACGTCACCAA CTCATGGTCAAAAATTAAAGCAGGCGATGTGGTTAGCGATACGCTTACCGGACAATCCTGGCGTATTCGTTACAGCAAAG ATATTCAGTCAACAGGCACCAATTTCACTGTCGCCGGCTACCGTTATTCGACCAAAGATTACTACGCTCTTGAGGATGTG CTGGATACCTATAGCGATAATAGTCACTATGATCATGTCCGCAATCGCACCGACCTGTCGTTATCGCAAGACATTATCTA CGGTTCCATTTCACTCACTTTATATAATGAAGATTACTGGAATGACACTCATACCACATCATTAGGTATTGGCTATAACA ACACATGGCATAACGTAAGCTATGGCATTAACTATTCTTATACGCTGAACGCCGATAATTCTCAGGATGAAGACGACGAT ACGGAAGACAGTAATGACCAGCAAATTTCAATCAATATTAGTATTCCGTTAGATGCCTTTATGCCGTCAACGTATGCCAC CTACAATATGAACTCCGCGAAAGACGGCGATACCACGCATACTGTCGGTTTAAACGGAACAGCGCTGGCACAGAAAAATC TCTCATGGAGCGTTCAGGAAGGTTATTCCTCTCAAGAGAAAGCCACCAGCGGTAATGTGAGCGCAACCTATAACGGGACG TATGCGGATATTAACGGCGGATATAGCTACGATAATCATATGCGTCGCCTGAATTATGGCGTTCAGGTCGGCGTACTGTT ACATCGAAATGGCCTGACACTATCCCAGCCAATGGACGACACCATCATATTGGTTAAAGCCCCTGGCGCAGCGGGTGTCC CCGTGAATAACGAAACGGGCGTGGACACCGATTTTCGGGGTTATGCCGTCGTACCTTATGCTTCGCCTTACCATCGTAAT GAAGTCTCTTTAGATACGACGGGCATTAGAAAAAATATTGAGCTCATTGATACCAGTAAAACGCTGGTGCCTACCCGTGG CGCGGTGGTCAGGGCTGAATATAAAACCAATATTGGTTACAAGGCATTGATGGTATTAACCCGCATAAACAATCTTCCTG TTCCTTTTGGCGCGACCGTCTCGTCTTTAACAAAACCAGACAATCACAGCAGTTTTGTTGGTGATGCGGGGCAGGCCTGG TTAACCGGACTGGAAAAACAAGGGCGGTTATTAGTGAAGTGGGGACCAACAGCAGCAGACCAGTGTCAGGTCTCTTATCG TATACCGAGCTCCCCCTCCGCTTCTGGCGTAGAAATCTTACACGAGCAATGCCAGTGA
Upstream 100 bases:
>100_bases GCGATTAATCAGCGATTATGGGATGAGTTTAGAGCCGCATTCCGGTTCATTCTAGCCATTAACGACTTCATTTTACTTTT ACCCTTTCAGGACTTTTACT
Downstream 100 bases:
>100_bases TTCTGGTGGGATAAAAGATGAATATGAACAGATTTGCTGCATTAGCCGCCCTGTTAACGTTCACGGGTCTGGCATTATGG TCGCCCTCGATCAGCGCGGC
Product: fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 845; Mature: 845
Protein sequence:
>845_residues MQFSRVEPRSQLALSFLFICCSIKPALAHDHFNPLSLENDEPGVENVDLSVFEKGGQAEGTYNVDIYINNTSVETKNIAF KNKKSADNKLSLQPCLSVEQLKQWGVKTENFPELKNDPNGCTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPREFVPT SEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYTYVSRDIEFLKG QLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTG GSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLKYDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIESTLS NDVYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRYSTKDYYALEDV LDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYNEDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDD TEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDGDTTHTVGLNGTALAQKNLSWSVQEGYSSQEKATSGNVSATYNGT YADINGGYSYDNHMRRLNYGVQVGVLLHRNGLTLSQPMDDTIILVKAPGAAGVPVNNETGVDTDFRGYAVVPYASPYHRN EVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQAW LTGLEKQGRLLVKWGPTAADQCQVSYRIPSSPSASGVEILHEQCQ
Sequences:
>Translated_845_residues MQFSRVEPRSQLALSFLFICCSIKPALAHDHFNPLSLENDEPGVENVDLSVFEKGGQAEGTYNVDIYINNTSVETKNIAF KNKKSADNKLSLQPCLSVEQLKQWGVKTENFPELKNDPNGCTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPREFVPT SEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYTYVSRDIEFLKG QLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTG GSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLKYDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIESTLS NDVYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRYSTKDYYALEDV LDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYNEDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDD TEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDGDTTHTVGLNGTALAQKNLSWSVQEGYSSQEKATSGNVSATYNGT YADINGGYSYDNHMRRLNYGVQVGVLLHRNGLTLSQPMDDTIILVKAPGAAGVPVNNETGVDTDFRGYAVVPYASPYHRN EVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQAW LTGLEKQGRLLVKWGPTAADQCQVSYRIPSSPSASGVEILHEQCQ >Mature_845_residues MQFSRVEPRSQLALSFLFICCSIKPALAHDHFNPLSLENDEPGVENVDLSVFEKGGQAEGTYNVDIYINNTSVETKNIAF KNKKSADNKLSLQPCLSVEQLKQWGVKTENFPELKNDPNGCTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPREFVPT SEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYTYVSRDIEFLKG QLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTG GSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLKYDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIESTLS NDVYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRYSTKDYYALEDV LDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYNEDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDD TEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDGDTTHTVGLNGTALAQKNLSWSVQEGYSSQEKATSGNVSATYNGT YADINGGYSYDNHMRRLNYGVQVGVLLHRNGLTLSQPMDDTIILVKAPGAAGVPVNNETGVDTDFRGYAVVPYASPYHRN EVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQAW LTGLEKQGRLLVKWGPTAADQCQVSYRIPSSPSASGVEILHEQCQ
Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1790772, Length=878, Percent_Identity=39.1799544419134, Blast_Score=577, Evalue=1e-165, Organism=Escherichia coli, GI1789533, Length=837, Percent_Identity=39.3070489844683, Blast_Score=566, Evalue=1e-162, Organism=Escherichia coli, GI1787172, Length=866, Percent_Identity=37.29792147806, Blast_Score=558, Evalue=1e-160, Organism=Escherichia coli, GI1786744, Length=871, Percent_Identity=37.1986222732491, Blast_Score=548, Evalue=1e-157, Organism=Escherichia coli, GI1786332, Length=815, Percent_Identity=33.2515337423313, Blast_Score=389, Evalue=1e-109, Organism=Escherichia coli, GI1788427, Length=766, Percent_Identity=30.4177545691906, Blast_Score=322, Evalue=9e-89, Organism=Escherichia coli, GI87081778, Length=833, Percent_Identity=28.3313325330132, Blast_Score=268, Evalue=1e-72, Organism=Escherichia coli, GI1789610, Length=762, Percent_Identity=24.8031496062992, Blast_Score=155, Evalue=7e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 92697; Mature: 92697
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFSRVEPRSQLALSFLFICCSIKPALAHDHFNPLSLENDEPGVENVDLSVFEKGGQAEG CCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC TYNVDIYINNTSVETKNIAFKNKKSADNKLSLQPCLSVEQLKQWGVKTENFPELKNDPNG EEEEEEEEECCCCEECEEEECCCCCCCCCEECCCCCCHHHHHHCCCCCCCCCCCCCCCCC CTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPREFVPTSEWDEGINAFLLNYSFTGSQ CCHHHHHHHHHHHEEEECCEEEEECCEEEEEECCHHHCCCCCHHCCCEEEEEEEEECCCC DHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYTYVSRDIEFLKG CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHCC QLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNGYT EEEECCCCCCHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEE IYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLKYDLT EEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCEEECCCCEEEEEE VGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIESTLSNDVYHAALIGTGLNLGDLGA ECCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCHHHHCCCCEEEEEEECCCCCCCCCE LSLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRYSTKDYYALEDV EEEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCHHCCCCCEEEEEEEECCCCHHHHHHH LDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYNEDYWNDTHTTSLGIGYNNTWHNVS HHHCCCCCCHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEECCCCCCCCCEE YGINYSYTLNADNSQDEDDDTEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDGDTTH ECEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECHHHHCCCCEEEEECCCCCCCCCEE TVGLNGTALAQKNLSWSVQEGYSSQEKATSGNVSATYNGTYADINGGYSYDNHMRRLNYG EECCCCCEEEECCCCEEHHCCCCCHHHCCCCCEEEEECCEEEECCCCCCHHHHHHHCCCC VQVGVLLHRNGLTLSQPMDDTIILVKAPGAAGVPVNNETGVDTDFRGYAVVPYASPYHRN EEEEEEEEECCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC EVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATV EEEEECCCCCCCEEEEECCCEEECCCCCEEEEEECCCCCHHHHEEEHHHCCCCCCCCCCH SSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKWGPTAADQCQVSYRIPSSPSASGVEIL HHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHH HEQCQ HHHCC >Mature Secondary Structure MQFSRVEPRSQLALSFLFICCSIKPALAHDHFNPLSLENDEPGVENVDLSVFEKGGQAEG CCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC TYNVDIYINNTSVETKNIAFKNKKSADNKLSLQPCLSVEQLKQWGVKTENFPELKNDPNG EEEEEEEEECCCCEECEEEECCCCCCCCCEECCCCCCHHHHHHCCCCCCCCCCCCCCCCC CTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPREFVPTSEWDEGINAFLLNYSFTGSQ CCHHHHHHHHHHHEEEECCEEEEECCEEEEEECCHHHCCCCCHHCCCEEEEEEEEECCCC DHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNHDSDGQNSWDSAYTYVSRDIEFLKG CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHCC QLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMKGFAPVIRGVAKSSAQVTVEQNGYT EEEECCCCCCHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEE IYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDGSEQHFIVPYASVPVLQREGHLKYDLT EEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCEEECCCCEEEEEE VGRTRSSDTHSAQQNFAELTALYGLAGGITAYGGIESTLSNDVYHAALIGTGLNLGDLGA ECCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCHHHHCCCCEEEEEEECCCCCCCCCE LSLDVTNSWSKIKAGDVVSDTLTGQSWRIRYSKDIQSTGTNFTVAGYRYSTKDYYALEDV EEEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCHHCCCCCEEEEEEEECCCCHHHHHHH LDTYSDNSHYDHVRNRTDLSLSQDIIYGSISLTLYNEDYWNDTHTTSLGIGYNNTWHNVS HHHCCCCCCHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEECCCCCCCCCEE YGINYSYTLNADNSQDEDDDTEDSNDQQISINISIPLDAFMPSTYATYNMNSAKDGDTTH ECEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECHHHHCCCCEEEEECCCCCCCCCEE TVGLNGTALAQKNLSWSVQEGYSSQEKATSGNVSATYNGTYADINGGYSYDNHMRRLNYG EECCCCCEEEECCCCEEHHCCCCCHHHCCCCCEEEEECCEEEECCCCCCHHHHHHHCCCC VQVGVLLHRNGLTLSQPMDDTIILVKAPGAAGVPVNNETGVDTDFRGYAVVPYASPYHRN EEEEEEEEECCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC EVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATV EEEEECCCCCCCEEEEECCCEEECCCCCEEEEEECCCCCHHHHEEEHHHCCCCCCCCCCH SSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKWGPTAADQCQVSYRIPSSPSASGVEIL HHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHH HEQCQ HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7721701; 11677609 [H]