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The map label for this gene is rsd

Identifier: 16767419

GI number: 16767419

Start: 4382750

End: 4383238

Strand: Reverse

Name: rsd

Synonym: STM4165

Alternate gene names: 16767419

Gene position: 4383238-4382750 (Counterclockwise)

Preceding gene: 16767426

Following gene: 16767418

Centisome position: 90.24

GC content: 49.69

Gene sequence:

>489_bases
ATGCTAAACCAGCTGGAAAACCTGACGGAGCGCGTTGGCGGAAGCAACAAACTGGTCGATCGCTGGCTGGATGTACGTAA
GCACCTGCTCGTGGCTTACTACAATCTGGTTGGCATTAAGCCTGGCAAAGAATCGTACATGCGGCTGAATGAAAAAGCGC
TGGATGATTTTTGTCAGAGCCTGGTCGATTACCTTTCCGCCGGGCACTTCAGTATTTATGAACGTATTCTCCATAAATTG
GAAGGAAACGGTCAGCTTTTACATGCGGCAAAAATCTGGCCGCTGCTGGAAGATAATACGCAGCGCATTATGGATTATTA
CGACACCAGCCTGGAAACTGCCATCGATCACGATAATTGTCTCGAATTTCAACAAGCTCTGTCAGATATCGGCGAAGCGC
TGGAAGCCCGCTTTGTGCTGGAAGACAAGCTGATTATGCTGGTGTTTGACGCGATGCACGACGGCGCCAGAGTCAAACGT
CCCGCTTGA

Upstream 100 bases:

>100_bases
CGATCCATAGCTATTGCACTACCTTTGCTTCACTGGCATGTTGTTAACATTATTTTTACATTCATGGCGAGCAGCCTTTA
TCTAACTTGCGGAGACAATC

Downstream 100 bases:

>100_bases
GTTCTGCGCGAGTAACGGGTAGTTTACTTCAGCCCCCTCTTCGGAGGGGCGGTTATCTTGTCGGAGTGCTAATTTTCCAC
AAAAGCGTTCGTGATGCGTC

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
PA

Sequences:

>Translated_162_residues
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
PA
>Mature_162_residues
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKL
EGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR
PA

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family

Homologues:

Organism=Escherichia coli, GI1790428, Length=162, Percent_Identity=88.8888888888889, Blast_Score=287, Evalue=2e-79,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): RSD_SALA4 (B5F1H8)

Other databases:

- EMBL:   CP001138
- RefSeq:   YP_002149073.1
- ProteinModelPortal:   B5F1H8
- SMR:   B5F1H8
- PRIDE:   B5F1H8
- GeneID:   6793554
- GenomeReviews:   CP001138_GR
- KEGG:   sea:SeAg_B4409
- HOGENOM:   HBG416628
- OMA:   AGHFEIY
- ProtClustDB:   PRK11718
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01181
- InterPro:   IPR007448
- PIRSF:   PIRSF016548

Pfam domain/function: PF04353 Rsd_AlgQ

EC number: NA

Molecular weight: Translated: 18654; Mature: 18654

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC
HHHHHHCCCHHHHHHHHHHHCCCCCEEHHHHHCCHHHCHHHHHHHHHHHHHHHHCCCHHH
LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC
HHHHHHCCCHHHHHHHHHHHCCCCCEEHHHHHCCHHHCHHHHHHHHHHHHHHHHCCCHHH
LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA