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The map label for this gene is yijO [H]

Identifier: 16767382

GI number: 16767382

Start: 4332297

End: 4333148

Strand: Reverse

Name: yijO [H]

Synonym: STM4117

Alternate gene names: 16767382

Gene position: 4333148-4332297 (Counterclockwise)

Preceding gene: 16767383

Following gene: 16767376

Centisome position: 89.21

GC content: 56.34

Gene sequence:

>852_bases
ATGTATCACGACGTCAGCCACCTTCTCTCCCGTCTCATCAACGGCCCGCTGCCGCTGCGCCAGATTTATTTTGCCAGCGC
CAGCGGCCCAGCGCCGGAACTGGCGTACCAGGTGGATTTTCCGCGGCTGGAGATTGTGCTGGAGGGCGAGCTTACTGACA
TGAGCATTACCGCCCCGCTCATTCCTTGCGATGTTCTCTACGTTCCGGCTGGCGGCTGGAACATCCCGCAATGGCAAACG
CCCGTCACCACCCTGAGCATTCTGTTTGGCAAACAGCAGTTAGGTTTCAGCGTAGTCCACTGGGATGGTCAGCAGCATCA
AAACCTCACGAAACAGCACGTTGCGCGCCGCGGCCCGCGTATCGGCTCGTTCCTGTTACAAACGCTTAATGAGATGCAGA
TGCAGCCGCAAGAGCAGCAAACGGCCAGATTGATTGTCGCCAGCCTACTAAGCCATTGCCGCGATCTGCTCGGCAGCCAA
ATCCAGACCGCCTCCCGCAGCCGCGCGCTTTTTGAAGCCATTCGGGAGTATATTGATGAACGCTACGCCGCGCCGTTGAC
GCGCGAATCGGTAGCACAGGCGTTTTATATCTCGCCAAATTACCTCTCGCACCTGTTCCAGAAAACGGGGGCCATCGGCT
TTAACGAATACCTGAACCATACGCGACTGGAACACGCCAAAACGTTGCTGAAGGGTTATGACCTGAAAGTGAAAGAGGTG
GCGCACCGCTGCGGCTTTGTCGACAGTAACTATTTCTGCCGCCTGTTTCGCAAAAATACGGAACGCTCGCCGTCGGAGTA
TCGCCGCCAGTATCACAGCCAGCTAACGGAAAAGCAGATTACTCCAGGATAA

Upstream 100 bases:

>100_bases
CCGGATAAGGCGCAAAGCGCCGCTATCCGGCAATAATCGCTTGAGGACATCGGTTTTCGACGTTACTGTTTCCTCTGTTT
GCGATCGGCAGGGGATTATC

Downstream 100 bases:

>100_bases
GGTGGGTATGTTGCGGCGCGGAAAGGAGTTTACGCACAGCGCTCATTACCCGCTGTGGCTCCCGCAAAAAAGCGCTGATC
CCCGACTGGACATAGCGACT

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDMSITAPLIPCDVLYVPAGGWNIPQWQT
PVTTLSILFGKQQLGFSVVHWDGQQHQNLTKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
IQTASRSRALFEAIREYIDERYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKQITPG

Sequences:

>Translated_283_residues
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDMSITAPLIPCDVLYVPAGGWNIPQWQT
PVTTLSILFGKQQLGFSVVHWDGQQHQNLTKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
IQTASRSRALFEAIREYIDERYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKQITPG
>Mature_283_residues
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDMSITAPLIPCDVLYVPAGGWNIPQWQT
PVTTLSILFGKQQLGFSVVHWDGQQHQNLTKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ
IQTASRSRALFEAIREYIDERYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKQITPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=282, Percent_Identity=89.0070921985816, Blast_Score=504, Evalue=1e-144,
Organism=Escherichia coli, GI1788725, Length=279, Percent_Identity=36.2007168458781, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1790339, Length=162, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787987, Length=115, Percent_Identity=29.5652173913043, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32372; Mature: 32372

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDMSITAPL
CCCCHHHHHHHHHCCCCCHHHHEEECCCCCCCCCEEEECCCEEEEEEECCCCCCEEECCC
IPCDVLYVPAGGWNIPQWQTPVTTLSILFGKQQLGFSVVHWDGQQHQNLTKQHVARRGPR
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHCCCH
IGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSRALFEAIREYIDE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
HHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKQITPG
HHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGELTDMSITAPL
CCCCHHHHHHHHHCCCCCHHHHEEECCCCCCCCCEEEECCCEEEEEEECCCCCCEEECCC
IPCDVLYVPAGGWNIPQWQTPVTTLSILFGKQQLGFSVVHWDGQQHQNLTKQHVARRGPR
CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHCCCH
IGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQIQTASRSRALFEAIREYIDE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
HHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKQITPG
HHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]