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The map label for this gene is yhjJ [H]

Identifier: 16766899

GI number: 16766899

Start: 3788563

End: 3790050

Strand: Reverse

Name: yhjJ [H]

Synonym: STM3613

Alternate gene names: 16766899

Gene position: 3790050-3788563 (Counterclockwise)

Preceding gene: 16766900

Following gene: 16766897

Centisome position: 78.03

GC content: 54.1

Gene sequence:

>1488_bases
ATGCAGGGCACAAAAATTCGACTCTTAGCGGGCAGTCTGTTGATGTTGGCCTCTGCCGGCTATGTGCAGGCAGATGCGCT
CCAGCCCGATCCGGCATGGCAACAGGGGACGCTGGCTAATGGGTTACAGTGGCAAGTGTTGGCTACGCCTCAGCGCCCCA
GCGATCGTATTGAAGTTCGTCTCCAGGTTAATACCGGTTCGCTCACCGAAAGTACGCAACAGAGCGGGTTCAGCCATGCG
ATTCCCCGTATCGCGCTGACGCAAAGCGGTGGTCTGGATGCCGCACAGGCACGTTCTTTATGGCAGCAAGGGTTTGATCC
GAAACGTCCCATGCCGCCCGTTATTGTTTCTTATGATTCCACGCTCTATAACCTCAGTTTACCCAATAACCGTAACGATC
TGCTGAAAGAAGCGCTGACCTATCTGGCTAACGTCTCCGGTAAATTAACCATTACGCCAGAGACGGTGAATCATGCGTTA
AGCAGCGAAGATATGGTTGCGACGTGGCCAGCAGATACTAAAGAGGGCTGGTGGCGTTATCGGCTGAAAGGGTCGGCGTT
ATTGGGGCACGATCCCGCGGAACCGTTAAAGCAGCCGGTAGACGCAGCCAAAATTCAGGCTTTCTATGAAAAATGGTACA
CCCCGGATGCCATGACGCTGATTGTTGTCGGCAACATTGATGCGCGCTCCGTCGCCGAGCAGATCAATAAAACGTTCGGT
ACGCTGAAAGGTAAACGCGAAACGCCCGCCCCGGTGCCGACGCTTTCGCCGCTGCGGGCGGAATCAGTGAGCATTATGAC
CGATGCGGTGCGCCAGGATCGTCTCTCCATTATGTGGGATACGCCGTGGCAACCGATTCGCGAGTCGGCGGCGCTGTTGC
GCTACTGGCAGGCGGATCTGGCGCGCGAAGCGCTGTTCTGGCATATCCAGCAAGAGCTTACTAAAAATAACGCGAAAGAT
ATTGGTCTGGGGTTTGACTGCCGGGTTCTGTTTCTGCGCGCGCAGTGCGCCATCAACATTGAATCACCTAATGATAAGCT
CAATACCAATTTGAGCCTGGTGGCGAATGAACTGGCGAAAGTACGCGACAAAGGTTTGTCGGAAGAGGAGTTTACTGCGC
TGGTGGCGCAGAAAAATCTCGAATTGCAAAAGCTGTTCGCGACCTACGCGCGTACCGATACTGACATTTTGACTGGACAG
CGTATGCGCTCGCTGCAGAATCAAGTGGTGGATATCGCGCCGGAGCAGTATCAGAAGCTGCGCCAGAATTTCCTCAACAG
CCTGACCGTTGATATGCTCAATCAGAATTTACGTCAGCAGCTATCGCAGGAGATGGCATTAATTTTGCTGCAACCGCAAG
GCGAGCCGGAATTTAATATGAAGGCGTTAAAGGCGACGTGGGATGAAATCATGGTCCCGACTACTGCCGCCGCTGTTGAA
GCAGATGAGGCGCATCCGGAAGTGACGGAGACACCGGCGGCACAGTAA

Upstream 100 bases:

>100_bases
TTAGGTTCTCGCGGTCTAACACGAAGTGTTTTTACGTCATATTCAGGCATCCCTGCCGGGGCTGTCTTTTTATTACCAGG
ATTGTTGATCAGGGGTTCAC

Downstream 100 bases:

>100_bases
GCTGCCGCCTGTCGGCCCGGTAAGCGCAGCGCCACCGGGCAAGAGCGAATGACTTACTGCGGCATCGCGTCGTGCGGAAT
AATGGCCCCACGGTACTGAA

Product: Zn-dependent peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MQGTKIRLLAGSLLMLASAGYVQADALQPDPAWQQGTLANGLQWQVLATPQRPSDRIEVRLQVNTGSLTESTQQSGFSHA
IPRIALTQSGGLDAAQARSLWQQGFDPKRPMPPVIVSYDSTLYNLSLPNNRNDLLKEALTYLANVSGKLTITPETVNHAL
SSEDMVATWPADTKEGWWRYRLKGSALLGHDPAEPLKQPVDAAKIQAFYEKWYTPDAMTLIVVGNIDARSVAEQINKTFG
TLKGKRETPAPVPTLSPLRAESVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWQADLAREALFWHIQQELTKNNAKD
IGLGFDCRVLFLRAQCAINIESPNDKLNTNLSLVANELAKVRDKGLSEEEFTALVAQKNLELQKLFATYARTDTDILTGQ
RMRSLQNQVVDIAPEQYQKLRQNFLNSLTVDMLNQNLRQQLSQEMALILLQPQGEPEFNMKALKATWDEIMVPTTAAAVE
ADEAHPEVTETPAAQ

Sequences:

>Translated_495_residues
MQGTKIRLLAGSLLMLASAGYVQADALQPDPAWQQGTLANGLQWQVLATPQRPSDRIEVRLQVNTGSLTESTQQSGFSHA
IPRIALTQSGGLDAAQARSLWQQGFDPKRPMPPVIVSYDSTLYNLSLPNNRNDLLKEALTYLANVSGKLTITPETVNHAL
SSEDMVATWPADTKEGWWRYRLKGSALLGHDPAEPLKQPVDAAKIQAFYEKWYTPDAMTLIVVGNIDARSVAEQINKTFG
TLKGKRETPAPVPTLSPLRAESVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWQADLAREALFWHIQQELTKNNAKD
IGLGFDCRVLFLRAQCAINIESPNDKLNTNLSLVANELAKVRDKGLSEEEFTALVAQKNLELQKLFATYARTDTDILTGQ
RMRSLQNQVVDIAPEQYQKLRQNFLNSLTVDMLNQNLRQQLSQEMALILLQPQGEPEFNMKALKATWDEIMVPTTAAAVE
ADEAHPEVTETPAAQ
>Mature_495_residues
MQGTKIRLLAGSLLMLASAGYVQADALQPDPAWQQGTLANGLQWQVLATPQRPSDRIEVRLQVNTGSLTESTQQSGFSHA
IPRIALTQSGGLDAAQARSLWQQGFDPKRPMPPVIVSYDSTLYNLSLPNNRNDLLKEALTYLANVSGKLTITPETVNHAL
SSEDMVATWPADTKEGWWRYRLKGSALLGHDPAEPLKQPVDAAKIQAFYEKWYTPDAMTLIVVGNIDARSVAEQINKTFG
TLKGKRETPAPVPTLSPLRAESVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWQADLAREALFWHIQQELTKNNAKD
IGLGFDCRVLFLRAQCAINIESPNDKLNTNLSLVANELAKVRDKGLSEEEFTALVAQKNLELQKLFATYARTDTDILTGQ
RMRSLQNQVVDIAPEQYQKLRQNFLNSLTVDMLNQNLRQQLSQEMALILLQPQGEPEFNMKALKATWDEIMVPTTAAAVE
ADEAHPEVTETPAAQ

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1789946, Length=498, Percent_Identity=85.140562248996, Blast_Score=888, Evalue=0.0,
Organism=Escherichia coli, GI1787770, Length=443, Percent_Identity=22.5733634311512, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: NA

Molecular weight: Translated: 55181; Mature: 55181

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGTKIRLLAGSLLMLASAGYVQADALQPDPAWQQGTLANGLQWQVLATPQRPSDRIEVR
CCCCEEEHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEE
LQVNTGSLTESTQQSGFSHAIPRIALTQSGGLDAAQARSLWQQGFDPKRPMPPVIVSYDS
EEECCCCCCCHHHHCCHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECC
TLYNLSLPNNRNDLLKEALTYLANVSGKLTITPETVNHALSSEDMVATWPADTKEGWWRY
EEEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCEEEECCCCCCCCCEEE
RLKGSALLGHDPAEPLKQPVDAAKIQAFYEKWYTPDAMTLIVVGNIDARSVAEQINKTFG
EEECCEEECCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
TLKGKRETPAPVPTLSPLRAESVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWQADL
HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH
AREALFWHIQQELTKNNAKDIGLGFDCRVLFLRAQCAINIESPNDKLNTNLSLVANELAK
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHH
VRDKGLSEEEFTALVAQKNLELQKLFATYARTDTDILTGQRMRSLQNQVVDIAPEQYQKL
HHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
RQNFLNSLTVDMLNQNLRQQLSQEMALILLQPQGEPEFNMKALKATWDEIMVPTTAAAVE
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHCC
ADEAHPEVTETPAAQ
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MQGTKIRLLAGSLLMLASAGYVQADALQPDPAWQQGTLANGLQWQVLATPQRPSDRIEVR
CCCCEEEHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEE
LQVNTGSLTESTQQSGFSHAIPRIALTQSGGLDAAQARSLWQQGFDPKRPMPPVIVSYDS
EEECCCCCCCHHHHCCHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECC
TLYNLSLPNNRNDLLKEALTYLANVSGKLTITPETVNHALSSEDMVATWPADTKEGWWRY
EEEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCEEEECCCCCCCCCEEE
RLKGSALLGHDPAEPLKQPVDAAKIQAFYEKWYTPDAMTLIVVGNIDARSVAEQINKTFG
EEECCEEECCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
TLKGKRETPAPVPTLSPLRAESVSIMTDAVRQDRLSIMWDTPWQPIRESAALLRYWQADL
HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHH
AREALFWHIQQELTKNNAKDIGLGFDCRVLFLRAQCAINIESPNDKLNTNLSLVANELAK
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHH
VRDKGLSEEEFTALVAQKNLELQKLFATYARTDTDILTGQRMRSLQNQVVDIAPEQYQKL
HHHCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
RQNFLNSLTVDMLNQNLRQQLSQEMALILLQPQGEPEFNMKALKATWDEIMVPTTAAAVE
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHCC
ADEAHPEVTETPAAQ
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]