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The map label for this gene is rsr [H]

Identifier: 16766808

GI number: 16766808

Start: 3683125

End: 3684678

Strand: Reverse

Name: rsr [H]

Synonym: STM3521

Alternate gene names: 16766808

Gene position: 3684678-3683125 (Counterclockwise)

Preceding gene: 16766810

Following gene: 16766807

Centisome position: 75.86

GC content: 60.3

Gene sequence:

>1554_bases
ATGGCTAATCCACTTTTGTTCCGTTCGCTGTTAAGGGACGCGCCGCTGGCCAACGCCAGCAATCAGCAAGGCGCAGCGGC
CTTTGCCTTCACCCCGCGCCATAAACTGGCGCAAATGGTGATGACCGGCTGCATGAACGAGACTTTTTATGCCAGCGGCC
AGGCGCAGCTAAATGATGTTCTGGCGACGGCGAAAGATCTCGACGATCTGTTTTTAGCGCAACTGGCGATTTATGGCCGC
GAACGCGGGATGATGAAGGATATGCCCGCGCTGTTGACCGCCATTCTGGCGGCGCGTGGTTCGGCGCTGCTGCCGGTAGT
ATTTACGCGGGTGATCAACAATGGCCGGATGCTGCGTAACTTTGTGCAAATGTTGCGCAGCGGCGTGACCGGGCGGCGCT
CGCTGGGGACGCGGCCAAAGAAGCTGGTGCAGCGTTGGTTGCAGAACGCCAGCGAAGAGCGCTTATTGCAGGCATCGGTG
GGCAATGCGCCGTCGCTGGCGGATATCGTCAAAATGGTGCACCCACGGCCGCAGGCGGCGTGGCAGGAAGCCTTCTTCGC
CTGGCTGATTGGTAAGCCGTGCGATAAGGCGCAGCTGCCGGAAAAAACGCGCGCGCTGCTGGCGTTTCGTGAAGGCGACA
TGGGCGCGGCCTTACCCGATGTGTCGTTTTTACTACTGACCAACGCGCCGCTGAGTCGCGAACAGTGGGCGCAACTGGCG
CAGCGGATGAGTTGGCAAACGTTACGGATGAATTTGAATACGCTGGCGCGTCATGACGTGTTTGAGAATGCAACGCTTGC
CGCCAGCGTGGCGCAGCGGCTGGCGGACAGGGCGCAGGTGCGCCAGTCCTGGGTTTATCCTTATCAGTTGCTGTCGGCGT
GGAGCAATCTGCAAAGCGGCGTGCCGCAGGTTATTCGCGAGGCTTTAGCGCAGGCGATGGAGTACGCGCTGGAGAACATT
CCGCCGTTTCGCGGCAATGTGGTGGTCTGCCCGGACGTGTCGGGGTCGATGAAGTCGTCGATAACCGGCTATCGCAAGGG
GGAGACCAGTAAGATCCGCTGCGTGGACGTTGCCGGGCTGATCGCCGCCGCCGTGCTGCGTAATCATCCGCAGGCCCGCG
TGCTGCCGTTTGAATGCGATGTGGTCGACGTGCGGCTTGATGCGCGCCAGTCGGTCATGCACAACGCGCAAAAGCTGGCG
GCGGTTGGCGGCGGCGGCACCAACTGCTCCGCGCCGCTGCGTAGGTTGTTGAACGAGCGGGCGCGGGTGGATCTGGTGAT
TATGGTGTCGGATAACGAATCGTGGGTTGATAAATCGCGCCATGGCTCAACGGCCACCATGGAATGCTGGATCGAACTGA
AAAAGCGCAACCCGCAGGCGCGCCTGGTGTGTATCGATCTGCTGCCTTACGGCACCACCCAGGCGGCGGAACGAAGCGAT
ATTTTGAACGTCGGCGGCTTCAGCGACGAGGTGTTTACGGTGATAGATAACTTTGTTAACGGTCACTATGGCAGCGCGCA
CTGGCTGGAAGAGATTGAAGCCGTGACGTTGTAA

Upstream 100 bases:

>100_bases
ATAAATCAATTAAAAATCAATAGATTAAAAAATAATTTATTTTCTGGCACGCTGGTTGCAATAACCATGGCATGGAGAAT
AACGGAAATGGGAAAAACAA

Downstream 100 bases:

>100_bases
AGAGTATTCAGCGCAACCCGCAGGCGCGCCTGGTGTGTATCGATCTGCTGCCTTACGGCACCACCCAGGCGGCGGAACGA
AGCGATATTTTGAACGTCGG

Product: ribonucleoprotein related-protein

Products: NA

Alternate protein names: Ro sixty-related protein [H]

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MANPLLFRSLLRDAPLANASNQQGAAAFAFTPRHKLAQMVMTGCMNETFYASGQAQLNDVLATAKDLDDLFLAQLAIYGR
ERGMMKDMPALLTAILAARGSALLPVVFTRVINNGRMLRNFVQMLRSGVTGRRSLGTRPKKLVQRWLQNASEERLLQASV
GNAPSLADIVKMVHPRPQAAWQEAFFAWLIGKPCDKAQLPEKTRALLAFREGDMGAALPDVSFLLLTNAPLSREQWAQLA
QRMSWQTLRMNLNTLARHDVFENATLAASVAQRLADRAQVRQSWVYPYQLLSAWSNLQSGVPQVIREALAQAMEYALENI
PPFRGNVVVCPDVSGSMKSSITGYRKGETSKIRCVDVAGLIAAAVLRNHPQARVLPFECDVVDVRLDARQSVMHNAQKLA
AVGGGGTNCSAPLRRLLNERARVDLVIMVSDNESWVDKSRHGSTATMECWIELKKRNPQARLVCIDLLPYGTTQAAERSD
ILNVGGFSDEVFTVIDNFVNGHYGSAHWLEEIEAVTL

Sequences:

>Translated_517_residues
MANPLLFRSLLRDAPLANASNQQGAAAFAFTPRHKLAQMVMTGCMNETFYASGQAQLNDVLATAKDLDDLFLAQLAIYGR
ERGMMKDMPALLTAILAARGSALLPVVFTRVINNGRMLRNFVQMLRSGVTGRRSLGTRPKKLVQRWLQNASEERLLQASV
GNAPSLADIVKMVHPRPQAAWQEAFFAWLIGKPCDKAQLPEKTRALLAFREGDMGAALPDVSFLLLTNAPLSREQWAQLA
QRMSWQTLRMNLNTLARHDVFENATLAASVAQRLADRAQVRQSWVYPYQLLSAWSNLQSGVPQVIREALAQAMEYALENI
PPFRGNVVVCPDVSGSMKSSITGYRKGETSKIRCVDVAGLIAAAVLRNHPQARVLPFECDVVDVRLDARQSVMHNAQKLA
AVGGGGTNCSAPLRRLLNERARVDLVIMVSDNESWVDKSRHGSTATMECWIELKKRNPQARLVCIDLLPYGTTQAAERSD
ILNVGGFSDEVFTVIDNFVNGHYGSAHWLEEIEAVTL
>Mature_516_residues
ANPLLFRSLLRDAPLANASNQQGAAAFAFTPRHKLAQMVMTGCMNETFYASGQAQLNDVLATAKDLDDLFLAQLAIYGRE
RGMMKDMPALLTAILAARGSALLPVVFTRVINNGRMLRNFVQMLRSGVTGRRSLGTRPKKLVQRWLQNASEERLLQASVG
NAPSLADIVKMVHPRPQAAWQEAFFAWLIGKPCDKAQLPEKTRALLAFREGDMGAALPDVSFLLLTNAPLSREQWAQLAQ
RMSWQTLRMNLNTLARHDVFENATLAASVAQRLADRAQVRQSWVYPYQLLSAWSNLQSGVPQVIREALAQAMEYALENIP
PFRGNVVVCPDVSGSMKSSITGYRKGETSKIRCVDVAGLIAAAVLRNHPQARVLPFECDVVDVRLDARQSVMHNAQKLAA
VGGGGTNCSAPLRRLLNERARVDLVIMVSDNESWVDKSRHGSTATMECWIELKKRNPQARLVCIDLLPYGTTQAAERSDI
LNVGGFSDEVFTVIDNFVNGHYGSAHWLEEIEAVTL

Specific function: Binds to several small RNAs that accumulate during recovery from UV irradiation. Contributes to the resistance of D.radiodurans to ultraviolet irradiation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TROVE domain [H]

Homologues:

Organism=Homo sapiens, GI291084629, Length=287, Percent_Identity=24.0418118466899, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI31377800, Length=287, Percent_Identity=24.0418118466899, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI291084624, Length=275, Percent_Identity=23.6363636363636, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI108796056, Length=222, Percent_Identity=23.4234234234234, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI291084635, Length=222, Percent_Identity=23.4234234234234, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008858 [H]

Pfam domain/function: PF05731 TROVE [H]

EC number: NA

Molecular weight: Translated: 57108; Mature: 56976

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50988 TROVE ; PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPLLFRSLLRDAPLANASNQQGAAAFAFTPRHKLAQMVMTGCMNETFYASGQAQLNDV
CCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LATAKDLDDLFLAQLAIYGRERGMMKDMPALLTAILAARGSALLPVVFTRVINNGRMLRN
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
FVQMLRSGVTGRRSLGTRPKKLVQRWLQNASEERLLQASVGNAPSLADIVKMVHPRPQAA
HHHHHHCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
WQEAFFAWLIGKPCDKAQLPEKTRALLAFREGDMGAALPDVSFLLLTNAPLSREQWAQLA
HHHHHHHHHHCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCEEEEEECCCCCHHHHHHHH
QRMSWQTLRMNLNTLARHDVFENATLAASVAQRLADRAQVRQSWVYPYQLLSAWSNLQSG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
VPQVIREALAQAMEYALENIPPFRGNVVVCPDVSGSMKSSITGYRKGETSKIRCVDVAGL
HHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCEEEEEHHHHH
IAAAVLRNHPQARVLPFECDVVDVRLDARQSVMHNAQKLAAVGGGGTNCSAPLRRLLNER
HHHHHHHCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
ARVDLVIMVSDNESWVDKSRHGSTATMECWIELKKRNPQARLVCIDLLPYGTTQAAERSD
CCEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHC
ILNVGGFSDEVFTVIDNFVNGHYGSAHWLEEIEAVTL
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
ANPLLFRSLLRDAPLANASNQQGAAAFAFTPRHKLAQMVMTGCMNETFYASGQAQLNDV
CCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LATAKDLDDLFLAQLAIYGRERGMMKDMPALLTAILAARGSALLPVVFTRVINNGRMLRN
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHH
FVQMLRSGVTGRRSLGTRPKKLVQRWLQNASEERLLQASVGNAPSLADIVKMVHPRPQAA
HHHHHHCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
WQEAFFAWLIGKPCDKAQLPEKTRALLAFREGDMGAALPDVSFLLLTNAPLSREQWAQLA
HHHHHHHHHHCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCEEEEEECCCCCHHHHHHHH
QRMSWQTLRMNLNTLARHDVFENATLAASVAQRLADRAQVRQSWVYPYQLLSAWSNLQSG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
VPQVIREALAQAMEYALENIPPFRGNVVVCPDVSGSMKSSITGYRKGETSKIRCVDVAGL
HHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHCCCCCCCCCCEEEEEHHHHH
IAAAVLRNHPQARVLPFECDVVDVRLDARQSVMHNAQKLAAVGGGGTNCSAPLRRLLNER
HHHHHHHCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
ARVDLVIMVSDNESWVDKSRHGSTATMECWIELKKRNPQARLVCIDLLPYGTTQAAERSD
CCEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHC
ILNVGGFSDEVFTVIDNFVNGHYGSAHWLEEIEAVTL
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266; 10766734 [H]