Click here to switch to the map view.

The map label for this gene is rtcB [H]

Identifier: 16766807

GI number: 16766807

Start: 3681363

End: 3682580

Strand: Reverse

Name: rtcB [H]

Synonym: STM3519

Alternate gene names: 16766807

Gene position: 3682580-3681363 (Counterclockwise)

Preceding gene: 16766808

Following gene: 16766806

Centisome position: 75.81

GC content: 54.35

Gene sequence:

>1218_bases
ATGATGAATTACGAATTAATGACCACCCAGAACGCACCGGTAAAAATGTGGACCAAAGGCGTACCGGTAGAAGACGATGC
CCGTCAGCAGCTGATCAATACGGCGAAAATGCCGTTTATTTTCAAACATATTGCCGTTATGCCGGATGTGCATTTGGGGA
AAGGATCGACCATCGGTAGCGTGATCCCGACGAAAGGGGCGATTATTCCGGCGGCGGTGGGCGTGGATATCGGTTGTGGA
ATGAACGCGCTGCGTACCAGCTTAACGGCGGCCGATCTGCCGGAAAATCTGGCGGATCTGCGTAGCGCCATAGAGGCCGC
TGTGCCTCACGGGCGTACCACCGGACGCGGGCATCGCGATGTGGGCGCATGGGGAAACCCGCCCGCCAACGTTAATGAAA
AATGGGCGCAACTGGAAGCGGGATATCAGTGGTTAACGCAAAAATATCCGCGCTTTTTGAATACCAATAACTATAAGCAC
CTGGGAACGTTGGGAACCGGTAACCACTTTATTGAGATCTGTCTGGATGAAACCGATCGGGTATGGATCATGCTGCACTC
CGGTTCGCGCGGGATCGGTAACGCCATCGGCACCTATTTTATCGGCCTGGCGCAGCAAGAAATGCAGGAGCAGTTAGAAA
CGCTGCCGTCCCGCGATCTGGCGTATTTTAATGAAGGAAGCGAATATTTTGACGATTACCTGAAAGCGGTACACTGGGCA
CAACAATTCGCCAGCCTGAACCGCGAGGCGATGATGGAAAACGCGCTGGCGGCGCTCCAGCGCTGCGTGGAAAAACCGAG
CGCCCTCGATATGGACGAGATCAACTGCCACCATAACTATGTGCAAAAAGAGCAGCACTTTGGCGAAGAGATCTATGTGA
CGCGTAAAGGGGCTGTTTCGGCGCGGCGCGGTGAGTTCGGTATCATTCCCGGTTCGATGGGGGCGAAAAGCTTTATCGTG
CGCGGGCTGGGTAACGAAGAGTCGTTCTGTTCGTGCAGCCACGGCGCCGGACGTGTGATGAGCCGAACGAAAGCGAAGAA
ACTGTTTAGCGTTGACGATCAAATTCGTGCCACCGCGCATGTCGAATGCCGTAAAGATGCGGACGTGATCGACGAGATCC
CAATGGCGTATAAAGATATTGATGCGGTGATGGCGGCGCAGTCCGACCTGGTTGAAATCATGTACGCCCTGCGGCAGGTG
GTGTGCGTTAAAGGATAG

Upstream 100 bases:

>100_bases
GCGGGTTCGAGACCCGTCAGAGCCCGGCGCTGTAGCTCAATGGTAGAGCGGTGTATTCACATAAACTTGTCGCCACCCTA
ATGATTAAAACGAGAAAAAA

Downstream 100 bases:

>100_bases
AAAATGGCAAGGATCATCGCGCTGGATGGCGCACAGGGAGAGGGCGGCGGGCAGATTTTGCGCTCGGCGCTGAGTTTATC
AATGATAACCGGCCAGCCGT

Product: cytoplasmic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCG
MNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRDVGAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKH
LGTLGTGNHFIEICLDETDRVWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
QQFASLNREAMMENALAALQRCVEKPSALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSARRGEFGIIPGSMGAKSFIV
RGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHVECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQV
VCVKG

Sequences:

>Translated_405_residues
MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCG
MNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRDVGAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKH
LGTLGTGNHFIEICLDETDRVWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
QQFASLNREAMMENALAALQRCVEKPSALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSARRGEFGIIPGSMGAKSFIV
RGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHVECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQV
VCVKG
>Mature_405_residues
MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCG
MNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRDVGAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKH
LGTLGTGNHFIEICLDETDRVWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
QQFASLNREAMMENALAALQRCVEKPSALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVSARRGEFGIIPGSMGAKSFIV
RGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAHVECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQV
VCVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=450, Percent_Identity=28, Blast_Score=137, Evalue=1e-32,
Organism=Escherichia coli, GI2367224, Length=408, Percent_Identity=87.9901960784314, Blast_Score=759, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17506665, Length=449, Percent_Identity=27.3942093541203, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24585217, Length=448, Percent_Identity=27.9017857142857, Blast_Score=127, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 44785; Mature: 44785

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS01288 UPF0027

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGS
CCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC
VIPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRD
CCCCCCCEEHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCC
VGAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDETDR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCE
VWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHH
QQFASLNREAMMENALAALQRCVEKPSALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVS
HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHCCCEEEEEECCCCC
ARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAH
CCCCCEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHEE
VECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG
EECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGS
CCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC
VIPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLADLRSAIEAAVPHGRTTGRGHRD
CCCCCCCEEHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCC
VGAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDETDR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCE
VWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHH
QQFASLNREAMMENALAALQRCVEKPSALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVS
HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHCCCEEEEEECCCCC
ARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAH
CCCCCEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHEE
VECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG
EECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]