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The map label for this gene is yhaJ [H]

Identifier: 16766534

GI number: 16766534

Start: 3400012

End: 3400908

Strand: Reverse

Name: yhaJ [H]

Synonym: STM3235

Alternate gene names: 16766534

Gene position: 3400908-3400012 (Counterclockwise)

Preceding gene: 16766537

Following gene: 16766519

Centisome position: 70.01

GC content: 56.52

Gene sequence:

>897_bases
ATGGCTAAAGAGAGAGCGCTGACGCTTGAAGCATTGCGTGTGATGGACGCCATTGACCGCCGGGGCAGTTTTGCCGCAGC
GGCTGATGAGTTGGGGCGTGTGCCCTCCGCGCTGAGTTACACCATGCAGAAGCTGGAAGAAGAGTTGGACGTTGTACTGT
TCGATCGCTCCGGCCATCGTACAAAATTCACCAACGTCGGACGTATGCTGCTGGAACGCGGGCGGGTATTGCTGGAAGCG
GCAGACAAGTTAACGACGGATGCTGAAGCGTTGGCCCGCGGTTGGGAAACGCATCTGACGCTAGTCACTGAAGCTCTGGT
ACCGACGCCTGCTTTTTTTCCACTGATCGACCGGCTGGCCGCTAAAGCCAATACGCAGCTTTCATTGATTACCGAAGTAC
TGGCTGGCGCATGGGAGCGGCTTGAGCAGGGACGGGCGGATATCGTTATCGCTCCGGATATGCATTTTCGATCGTCGTCG
GAAATTAACTCCCGTAAGTTGTATACGTTAATGAATGTGTATGTCGCCGCGCCTGACCACCCTATTCATCAGGAGCCGGA
GCCGCTTTCGGAAGTGACGCGGGTTAAATACCGCGGCGTAGCGGTAGCGGATACCGCGCGCGAGCGGCCGGTATTAACGG
TGCAACTGCTGGATAAGCAGCCACGTCTGACGGTAAGCACGATTGAAGATAAACGTCAGGCGCTGCTGGCCGGGCTTGGC
GTCGCGACCATGCCATATTCGATGGTGGAACAGGATATTGCCGAAGGGCGGCTACGCGTGGTCAGCCCGGAATCGACCAG
CGAAATCGATATTATTATGGCCTGGCGGCGCGACAGTATGGGGGAGGCAAAAGCCTGGTGCCTGCGGGAAATACCTAAGC
TATTCGCCGGAAAATAA

Upstream 100 bases:

>100_bases
ATTAACCTCTCTTTACTTCCTTTTATGTTAAGGGGCTGGACGCTGCATTGTTAGCCAGATATTCTGCCCGGTATGTTCAA
ATTTCCTGAATGAGAACGTT

Downstream 100 bases:

>100_bases
ATAGCGCGCGGCGCTTTAAAAGCGGCGCCGCGCCGCCATCAGGAAAAACGTTTCGGATCGGGGCCGAAGCGGTTGTCGCC
CGGCGTACCATTCTGGCAGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEA
ADKLTTDAEALARGWETHLTLVTEALVPTPAFFPLIDRLAAKANTQLSLITEVLAGAWERLEQGRADIVIAPDMHFRSSS
EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
VATMPYSMVEQDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKAWCLREIPKLFAGK

Sequences:

>Translated_298_residues
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEA
ADKLTTDAEALARGWETHLTLVTEALVPTPAFFPLIDRLAAKANTQLSLITEVLAGAWERLEQGRADIVIAPDMHFRSSS
EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
VATMPYSMVEQDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKAWCLREIPKLFAGK
>Mature_297_residues
AKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAA
DKLTTDAEALARGWETHLTLVTEALVPTPAFFPLIDRLAAKANTQLSLITEVLAGAWERLEQGRADIVIAPDMHFRSSSE
INSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGV
ATMPYSMVEQDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKAWCLREIPKLFAGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=298, Percent_Identity=96.9798657718121, Blast_Score=590, Evalue=1e-170,
Organism=Escherichia coli, GI87082024, Length=286, Percent_Identity=37.7622377622378, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1787949, Length=280, Percent_Identity=29.2857142857143, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1786508, Length=296, Percent_Identity=28.7162162162162, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1786713, Length=281, Percent_Identity=26.6903914590747, Blast_Score=91, Evalue=7e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33218; Mature: 33087

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCC
TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTLVTEALVPTPAFFPLIDRLA
CHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH
AKANTQLSLITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDH
HHCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHEECCCC
PIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHCC
VATMPYSMVEQDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKAWCLREIPKLFAGK
HHHCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHR
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCC
TKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTLVTEALVPTPAFFPLIDRLA
CHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH
AKANTQLSLITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDH
HHCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHEECCCC
PIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLG
CCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHHHCC
VATMPYSMVEQDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKAWCLREIPKLFAGK
HHHCCHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]