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The map label for this gene is speC [H]

Identifier: 16766415

GI number: 16766415

Start: 3272773

End: 3274908

Strand: Reverse

Name: speC [H]

Synonym: STM3114

Alternate gene names: 16766415

Gene position: 3274908-3272773 (Counterclockwise)

Preceding gene: 16766417

Following gene: 16766410

Centisome position: 67.42

GC content: 54.54

Gene sequence:

>2136_bases
ATGAAATCAATGAATATTGCCGCCAGCGGTGAACTCATTCCCCGTCTCTCCACCCACCGAAACGTAGTGGCGCTGGACAG
TACCGACTTTACCGATGTGGCCGCAGTCGTCATTACCACTGCCGACAGCCGTAGCGGTATTCTGGCGTTGCTTAAACGCA
CCGGTTTTCACCTGCCGGTGTTTATGCTTGCGGATGAACCCGTCAGCGCGCCTGTCGGCGTTACGGCGGTAATAGTCGGG
AACGCGCAGGAATGGCTGGAGCTGGAAAACGCTGCCTGTCGCTACGAAGCGGAACTTCTGCCGCCCTTTTATGGCACCCT
GACCCAGTATGTCGACATGGGGAATAGTACTTTTGCTTGCCCGGGGCACCAGCATGGCGAATTTTTTAGAAAACATCCCG
CAGGCCGCCATTTTTATGACTTTTTTGGTGAAAACCTGTTTCGTGCGGATATGTGTAACGCCGATGTGAAACTTGGCGAT
CTGCTAATACATGAAGGTTCTGCCAAACACGCGCAGAAATTTGCGGCAAAAGTGTTTAATGCGGATAAAACCTACTTTGT
GCTGAATGGGACTTCGGCGGCGAATAAAGTGGTCACCAACGCCCTGCTGACGCGCGGCGATCTGGTGCTGTTTGATCGTA
ATAATCACAAATCCAACCACCACGGCGCCCTGATTCAGGCCGGGGCGACGCCAGTCTATCTTGAAGCGGCGCGTAACCCG
TTTGGTTTTATCGGTGGCATTGATGCGCACTGTTTTGATGAAACGTACCTGCGCGACCAGATTCGTGACGTGATGCCGGA
AAGCGCCGATGCGTCGCGTCCGTTCCGCCTGGCGATCATTCAGCTGGGTACCTATGACGGCACTATTTACAACGCCCGTC
AGGTGGTGGATAAAATCGGGCATCTCTGCGATTACATTCTGTTTGACTCCGCGTGGGTAGGCTATGAGCAGTTTATCAAT
ATGATGGCGGATACCTCGCCGTTGCGGCTGGAGCTTAATGAAAACGACCCTGGGATCTTTGTGACCCAATCGGTACATAA
GCAACAGGCGGGGTTCTCACAAACCTCGCAGATCCACAAAAAAGATAACCATATTCGCGGCCAGGCGCGTTTTTGCCCGC
ACAAACGCCTGAACAACGCCTTCATGTTGCATGCTTCAACCAGTCCGTTCTACCCGCTGTTTGCGGCGCTGGATGTCAAT
GCCAAAATCCACGAAGGGGAGAGCGGTCGCCGCCTGTGGGCGGAGTGCGTTGCGCTGGGCATTGACGCGCGTAAAGCCAT
TCTCGCCCGTTGCAAACTGCTTCAGCCCTTTATCCCACTGGTGGTTGACGGCAAGCCGTGGCAGGCATATCCGACGGAGA
CCATTGCCAGCAATCGTCGTTTCTTCAGTTTTGAACCCGGGGCGAAATGGCATGGCTTTGAGGGCTATGCGGATGACCAG
TATTTTGTCGACCCCTGTAAACTGTTACTGACCACGCCAGGTATTGATGCCGATAGTGGGCGATACACCGAATTCGGCAT
CCCGGCGACCATTCTCGCCCACTATCTGCGTGAGAACGGTATTGTGCCTGAGAAGTGCGATCTCAACTCGATTCTGTTCT
TGCTGACACCCGCCGAGAGCGAAGAGAAGCTGGCGCGACTGGTCGCGATGCTGGCGCAATTTGAACGGCACATTGAAGAC
GATACGCCGCTTGCGGATGTATTGCCGACGGTTTTTCAGAAATACCCGGTGCGCTACCGCGATTACACCCTGCGTGAGCT
ATGTCAGGAGATGCACAACCTGTACGTTAGCTTTGACGTTAAGGATCTGCAAAAAGCGATGTTCCGCAAAGAAAGCCTGC
CGCATGTGGCGATGAACCCACAGGATGCCAACAGCGCCTTTATTCGCGGCGATGTAGAGCTGGTGCGTATCAGCGAGGCG
GGCGGGCGTATTGCTGCCGAGGGGGCATTGCCATACCCGCCGGGCGTACTGTGCGTGGTGCCGGGGGAGATTTGGGGCGG
CGCGGCGCAGCGTTATTTTTTGGCGCTGGAAGAGGGCATCAATCTGTTGCCTGGTTTTTCGCCGGAATTGCAGGGGGTAT
ATAGCGAGACCGATGCCGATGGAATTCAACGCTTGTACGGATATGTTTTAAAGTAA

Upstream 100 bases:

>100_bases
GGCGGTCGGAGCTGGTATCCAGTTTGACCCGGCATCTCGTTGGGCAAGGCATCGGGCCTTGTCTGGGGTTACTCTACTCC
CGAAACGGATATTTGCGCTT

Downstream 100 bases:

>100_bases
CGTTGCCTGCAGGCCGGATAAGGCATTTACACCTTATCCGGCCTGCGAAACAGGGCAAGGATTAATGTGCAACGGGTTGC
GAACTTGCCGGAACGCGAAC

Product: ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 711; Mature: 711

Protein sequence:

>711_residues
MKSMNIAASGELIPRLSTHRNVVALDSTDFTDVAAVVITTADSRSGILALLKRTGFHLPVFMLADEPVSAPVGVTAVIVG
NAQEWLELENAACRYEAELLPPFYGTLTQYVDMGNSTFACPGHQHGEFFRKHPAGRHFYDFFGENLFRADMCNADVKLGD
LLIHEGSAKHAQKFAAKVFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLEAARNP
FGFIGGIDAHCFDETYLRDQIRDVMPESADASRPFRLAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIN
MMADTSPLRLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVN
AKIHEGESGRRLWAECVALGIDARKAILARCKLLQPFIPLVVDGKPWQAYPTETIASNRRFFSFEPGAKWHGFEGYADDQ
YFVDPCKLLLTTPGIDADSGRYTEFGIPATILAHYLRENGIVPEKCDLNSILFLLTPAESEEKLARLVAMLAQFERHIED
DTPLADVLPTVFQKYPVRYRDYTLRELCQEMHNLYVSFDVKDLQKAMFRKESLPHVAMNPQDANSAFIRGDVELVRISEA
GGRIAAEGALPYPPGVLCVVPGEIWGGAAQRYFLALEEGINLLPGFSPELQGVYSETDADGIQRLYGYVLK

Sequences:

>Translated_711_residues
MKSMNIAASGELIPRLSTHRNVVALDSTDFTDVAAVVITTADSRSGILALLKRTGFHLPVFMLADEPVSAPVGVTAVIVG
NAQEWLELENAACRYEAELLPPFYGTLTQYVDMGNSTFACPGHQHGEFFRKHPAGRHFYDFFGENLFRADMCNADVKLGD
LLIHEGSAKHAQKFAAKVFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLEAARNP
FGFIGGIDAHCFDETYLRDQIRDVMPESADASRPFRLAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIN
MMADTSPLRLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVN
AKIHEGESGRRLWAECVALGIDARKAILARCKLLQPFIPLVVDGKPWQAYPTETIASNRRFFSFEPGAKWHGFEGYADDQ
YFVDPCKLLLTTPGIDADSGRYTEFGIPATILAHYLRENGIVPEKCDLNSILFLLTPAESEEKLARLVAMLAQFERHIED
DTPLADVLPTVFQKYPVRYRDYTLRELCQEMHNLYVSFDVKDLQKAMFRKESLPHVAMNPQDANSAFIRGDVELVRISEA
GGRIAAEGALPYPPGVLCVVPGEIWGGAAQRYFLALEEGINLLPGFSPELQGVYSETDADGIQRLYGYVLK
>Mature_711_residues
MKSMNIAASGELIPRLSTHRNVVALDSTDFTDVAAVVITTADSRSGILALLKRTGFHLPVFMLADEPVSAPVGVTAVIVG
NAQEWLELENAACRYEAELLPPFYGTLTQYVDMGNSTFACPGHQHGEFFRKHPAGRHFYDFFGENLFRADMCNADVKLGD
LLIHEGSAKHAQKFAAKVFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLEAARNP
FGFIGGIDAHCFDETYLRDQIRDVMPESADASRPFRLAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIN
MMADTSPLRLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVN
AKIHEGESGRRLWAECVALGIDARKAILARCKLLQPFIPLVVDGKPWQAYPTETIASNRRFFSFEPGAKWHGFEGYADDQ
YFVDPCKLLLTTPGIDADSGRYTEFGIPATILAHYLRENGIVPEKCDLNSILFLLTPAESEEKLARLVAMLAQFERHIED
DTPLADVLPTVFQKYPVRYRDYTLRELCQEMHNLYVSFDVKDLQKAMFRKESLPHVAMNPQDANSAFIRGDVELVRISEA
GGRIAAEGALPYPPGVLCVVPGEIWGGAAQRYFLALEEGINLLPGFSPELQGVYSETDADGIQRLYGYVLK

Specific function: Spermidine biosynthesis from ornithine. [C]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI87082193, Length=711, Percent_Identity=87.0604781997187, Blast_Score=1316, Evalue=0.0,
Organism=Escherichia coli, GI1786909, Length=719, Percent_Identity=66.759388038943, Blast_Score=1005, Evalue=0.0,
Organism=Escherichia coli, GI221142684, Length=743, Percent_Identity=32.1668909825034, Blast_Score=361, Evalue=1e-100,
Organism=Escherichia coli, GI1790573, Length=621, Percent_Identity=34.1384863123994, Blast_Score=327, Evalue=1e-90,
Organism=Escherichia coli, GI1786384, Length=626, Percent_Identity=33.7060702875399, Blast_Score=314, Evalue=1e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR005308
- InterPro:   IPR011193
- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]

EC number: =4.1.1.17 [H]

Molecular weight: Translated: 79139; Mature: 79139

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSMNIAASGELIPRLSTHRNVVALDSTDFTDVAAVVITTADSRSGILALLKRTGFHLPV
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCEE
FMLADEPVSAPVGVTAVIVGNAQEWLELENAACRYEAELLPPFYGTLTQYVDMGNSTFAC
EEEECCCCCCCCCEEEEEECCHHHHHHHHCCHHEEEHHCCCHHHHHHHHHHHCCCCEEEC
PGHQHGEFFRKHPAGRHFYDFFGENLFRADMCNADVKLGDLLIHEGSAKHAQKFAAKVFN
CCCCCCHHHHHCCCCCHHHHHHCCCCEEHHCCCCCCEECEEEEECCCHHHHHHHHHHHHC
ADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLEAARNP
CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEECCCC
FGFIGGIDAHCFDETYLRDQIRDVMPESADASRPFRLAIIQLGTYDGTIYNARQVVDKIG
CCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
HLCDYILFDSAWVGYEQFINMMADTSPLRLELNENDPGIFVTQSVHKQQAGFSQTSQIHK
HHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEHHHHHHHCCCHHHHHHHH
KDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVALG
CCCCCCCCCCCCCHHHCCCEEEEEECCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHC
IDARKAILARCKLLQPFIPLVVDGKPWQAYPTETIASNRRFFSFEPGAKWHGFEGYADDQ
CCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCCCCC
YFVDPCKLLLTTPGIDADSGRYTEFGIPATILAHYLRENGIVPEKCDLNSILFLLTPAES
EEECCEEEEEECCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC
EEKLARLVAMLAQFERHIEDDTPLADVLPTVFQKYPVRYRDYTLRELCQEMHNLYVSFDV
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECH
KDLQKAMFRKESLPHVAMNPQDANSAFIRGDVELVRISEAGGRIAAEGALPYPPGVLCVV
HHHHHHHHHHHCCCEEECCCCCCCCEEEECCEEEEEEECCCCEEEECCCCCCCCCEEEEE
PGEIWGGAAQRYFLALEEGINLLPGFSPELQGVYSETDADGIQRLYGYVLK
CCHHCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKSMNIAASGELIPRLSTHRNVVALDSTDFTDVAAVVITTADSRSGILALLKRTGFHLPV
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCEE
FMLADEPVSAPVGVTAVIVGNAQEWLELENAACRYEAELLPPFYGTLTQYVDMGNSTFAC
EEEECCCCCCCCCEEEEEECCHHHHHHHHCCHHEEEHHCCCHHHHHHHHHHHCCCCEEEC
PGHQHGEFFRKHPAGRHFYDFFGENLFRADMCNADVKLGDLLIHEGSAKHAQKFAAKVFN
CCCCCCHHHHHCCCCCHHHHHHCCCCEEHHCCCCCCEECEEEEECCCHHHHHHHHHHHHC
ADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLEAARNP
CCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEECCCC
FGFIGGIDAHCFDETYLRDQIRDVMPESADASRPFRLAIIQLGTYDGTIYNARQVVDKIG
CCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHH
HLCDYILFDSAWVGYEQFINMMADTSPLRLELNENDPGIFVTQSVHKQQAGFSQTSQIHK
HHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEEHHHHHHHCCCHHHHHHHH
KDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVALG
CCCCCCCCCCCCCHHHCCCEEEEEECCCCCCEEEEEEECCCEEECCCCCHHHHHHHHHHC
IDARKAILARCKLLQPFIPLVVDGKPWQAYPTETIASNRRFFSFEPGAKWHGFEGYADDQ
CCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCEEEEECCCCCCCCCCCCCCCC
YFVDPCKLLLTTPGIDADSGRYTEFGIPATILAHYLRENGIVPEKCDLNSILFLLTPAES
EEECCEEEEEECCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC
EEKLARLVAMLAQFERHIEDDTPLADVLPTVFQKYPVRYRDYTLRELCQEMHNLYVSFDV
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECH
KDLQKAMFRKESLPHVAMNPQDANSAFIRGDVELVRISEAGGRIAAEGALPYPPGVLCVV
HHHHHHHHHHHCCCEEECCCCCCCCEEEECCEEEEEEECCCCEEEECCCCCCCCCEEEEE
PGEIWGGAAQRYFLALEEGINLLPGFSPELQGVYSETDADGIQRLYGYVLK
CCHHCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]