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The map label for this gene is xerD [H]

Identifier: 16766051

GI number: 16766051

Start: 2876815

End: 2877840

Strand: Direct

Name: xerD [H]

Synonym: STM2739

Alternate gene names: 16766051

Gene position: 2876815-2877840 (Clockwise)

Preceding gene: 16766050

Following gene: 16766052

Centisome position: 59.23

GC content: 49.71

Gene sequence:

>1026_bases
ATGAGCATCAGAAAACAGCCTAACGGAAAATGGTTGTGTGAATGCTACCCGAACGGACGGGATGGCAAACGTGTACGCAA
GCAATTTGCGACTAAAGGCGAGGCCATAGCATTCGAAAACCACACCATGGATGAGGTGAACAAAAAACCGTGGCTGGGGG
AGAAGGAAGATCGGCGGCATTTGTCAGAAGTGATTGATCAGTGGCATTCACTTTATGGGCAGACGCTGGCAGACCCCAAA
CGCCTGATGGCAAAACTCAGCATTATTTGTAATGGCTTGGGCGATCCCATTGCCTCAGAGTTAACCGCAGGCGATTTTAC
GAAATACAGGGAGGCACGGTTAAAAGGCGAAGTAAAAAATGAAGATGGCGTGCTTATGTCGCCAGTTAAGCCCCGTACGG
TAAACCTTGAACAACGTAACCTATCATCTGTTTTTGGCACACTGAAAAAGCTGGGCCACTGGTCAGCACCCAACCCGCTC
GCTGGGCTGCCAACATTCAAAATCGCAGAGGGCGAACTGGCGTTCCTGGCACCGGAAGAAATTAAACGTCTACTGGATGC
CTGTGCTGATTCTCAGAGTCCCAGTTTGCTGATGATTGCAAAAGTATGCCTGGCAACTGGCGCCCGATGGAGTGAAGCTG
AAAACCTGCAGGGCCATCAGCTATCAAAATACCGCATCACTTATACCAAGACGAAGGGCAAGAAAAACCGTACCGTGCCA
ATATCTCAGGATCTGTATGACGAACTCCCCAAAAACAGAGGGAAGCTATTCACGCCATGCAGAAAAGCTTTTGAGCGTGC
AGTAAAAAGAGCTGGTATTGAGCTACCAGAAGGCCAATGCACCCACGTGCTGCGCCATACCTTCGCCAGCCACTTTATGA
TGAACGGCGGAAACATACTGGTACTGCGCGATATTCTGGGCCACGCAGATATAAAAATGACGATGGTTTACGCTCACTTT
GCCCCTGACCACCTCGAAGACGCAGTGACGAAAAACCCGCTTCACAACCTCAATTGGAAACGCTAA

Upstream 100 bases:

>100_bases
CAAAATTGTAGTTCACCAAGATGAAACATCATTTGAATGCTCGGTCGACGACATTGAAGCTATCGGGCGTGCAGTCAAAG
TAATCAAGAGCCTCTAACTT

Downstream 100 bases:

>100_bases
TTTATGGCGGCATTTTGGCGGCAGGGCACTAAAAACGCGTAAAACGGACGAACACTGAATAATATTAACCCGCTGTTTTT
AAACGCAATACACTGTTTTT

Product: phage tail-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRHLSEVIDQWHSLYGQTLADPK
RLMAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPL
AGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVP
ISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHF
APDHLEDAVTKNPLHNLNWKR

Sequences:

>Translated_341_residues
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRHLSEVIDQWHSLYGQTLADPK
RLMAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPL
AGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVP
ISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHF
APDHLEDAVTKNPLHNLNWKR
>Mature_340_residues
SIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRHLSEVIDQWHSLYGQTLADPKR
LMAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLA
GLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVPI
SQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFA
PDHLEDAVTKNPLHNLNWKR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=234, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789261, Length=196, Percent_Identity=29.0816326530612, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38508; Mature: 38377

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRH
CCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCHHHHHH
LSEVIDQWHSLYGQTLADPKRLMAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKN
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCC
EDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPEE
CCCEEECCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEECHHH
IKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVP
HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
ISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNIL
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE
VLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
EEHHHHCCCCEEEEEEEEECCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMDEVNKKPWLGEKEDRRH
CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHCCCCCCCCHHHHHH
LSEVIDQWHSLYGQTLADPKRLMAKLSIICNGLGDPIASELTAGDFTKYREARLKGEVKN
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCC
EDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLAPEE
CCCEEECCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEECHHH
IKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQGHQLSKYRITYTKTKGKKNRTVP
HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
ISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNIL
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE
VLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPLHNLNWKR
EEHHHHCCCCEEEEEEEEECCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA