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The map label for this gene is tfaD [H]

Identifier: 16765929

GI number: 16765929

Start: 2755586

End: 2757517

Strand: Reverse

Name: tfaD [H]

Synonym: STM2608

Alternate gene names: 16765929

Gene position: 2757517-2755586 (Counterclockwise)

Preceding gene: 16765930

Following gene: 16765928

Centisome position: 56.77

GC content: 51.35

Gene sequence:

>1932_bases
ATGATTTCCGGAGAGCGCAGGGCGAATAATGCCAACAGAGCCATAACTAACGGGCTGATAGCGCTTCATATTCCCGTACC
GCTTACCACCGTGCAGTGGGCTGATGAGTATTACTATCTGCCAAAAGAGTCCTCCTACACCCCCGGCAAATGGGAAACGC
TGCCGTTTCAGGTAGCGATAATGAACGCGATGGGGTATGAACTGATCCGCGTTGTAAACCTCATTAAGTCTGCCCGCGTG
GGCTATACCAAAATGTTGCTGGGGGTGGAAGGCTATTTCATAGAGCACAAGTCGCGCAACAGCCTGCTGTTCCAGCCGAC
CGACTCATCCGCTGAGGATTTTATGAAATCCCACGTGGAGCCGACTATCAGGGATGTTCCTGTATTGCTGGAGCTGGCCC
CCTGGTTCGGGCGTAAACATCGTGATAACACGCTTACCCTGAAACGCTTTTCTTCCGGTGTCGGGTTCTGGTGCCTCGGC
GGTGCAGCAGCCAAAAACTACCGTGAAAAATCGGTGGATGTGGTCTGCTATGACGAATTGTCATCTTTTGAGCCGGATGT
CGAGAAAGAAGGTTCGCCGACGCTGCTGGGGGATAAACGTATTGAAGGTTCTGTCTGGCCTAAATCCATTCGGGGCTCCA
CACCAAAAGTCAAAGGGTCATGCCAGATTGAAAAGGCGGCAAATGAATCGGCGCATTTTATGCGTTTTTATGTACCGTGT
CCGCATTGTGGCGAAGAACAGTACCTTAAATTCGGTGATGGCAGTACGCCGTTCGGTCTGAAATGGGAGAAAAGCAAGCC
GGAGACGGTGTATTACCTTTGTGAACATAATGGATGCGTGATCCGTCAATCGGAACTTGATCAGAAAGCAGGCCGCTGGA
TTTGCGATAACACAGGCATGTGGACACGCGATGGACTGGCTTATTTCAGCGCGTCCGGTGAGGAGGTTCCGCCGCCACGA
TCCATTACCTTTCATATCTGGACGGCTTACAGTCCCTTTACCACCTGGATACAGATTATTTATGACTGGCTGGATGCGCT
GAAAGATCCAAATGGTGTGAAAACCTTTATAAACACCACGTTGGGCGAGCCTTATGAAGAGGCGGTGGCCGAAAAACTCA
GCCATGAGCTTTTGCTGGAAAAAGTGATTCATTATGCGGCGCCGGTTCCGGAGCGGGTGGTGTATCTGACCGCTGGTATC
GACTCCCAGCGTAACCGTTATGAAATGTATGTCTGGGGCTGGGCGCCGGGCGAAGAGGCTTTCCTTATTGATAAGCAAAT
TATCATGGGACGGCATGATGATGAAGATACCCTGCAGCGTGTGGATGCCGTCATTAATAAAAAATATCGTCATGCTGACG
GGACGGATATTTCCATTTCCCGTATCTGCTGGGATATCGGCGGTATCGATGCAGAAATCGTCTATAAACGCTCAAAAAAA
CACGGCATTTTCCGCGTGCTGCCTGTCAAAGGGGCCTCCGTTTACGGAAAACCCGTTATTACCATGCCTAAAAAACGCAA
CCAGAGCGGGGTATTCCTGTGCGAAATCGGTACTGATACTGCCAAAGAAATGCTTTACGCCAGAATGGGGGCGGTTACTG
CGCCTGCCGACGAAGCCACGCCTTATGCGATCCGCTTTCCGGATAATCCGGATGTTTTTACGGAGGTGGAAGCGAAGCAA
CTGGTAGCCGAAGAGCTGGTGGAGAAACTGGTTAACGGAAAATTCCGGCTGTTATGGGATGCCAAAGGACGTCGTAACGA
AGCGCTGGATTGTCTTGTCTATGCCAGTGCAGCGTTACGGGTGTCTGTGCAGCGCTGGCAACTGGATCTGGAGGCGCTGG
CGACATCAAGGAAAAGCGAAGAGCAGGATACCCCGACACTTGAACAACTGGCCGCAATGCTGGCAGGAGGAGTTAATGGC
AACAATCACTGA

Upstream 100 bases:

>100_bases
ATATCCTGATCTGTGCCAGTCGCACATCGATGTGGTCAGAACGGAAATCGCCAGGGCGTCAGGCAGGGCGCCACGATAGC
GGATGTGGAGAAGTGGACCG

Downstream 100 bases:

>100_bases
GCTACAGGAAGCCCGCGTCGCGCTGCATGACCTGATGACGGGAAAACGGGTGGCGACGGTTCAGAAAGACGGGCGACGGG
TTGAATTTACCGCGACATCG

Product: terminase-like large protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MISGERRANNANRAITNGLIALHIPVPLTTVQWADEYYYLPKESSYTPGKWETLPFQVAIMNAMGYELIRVVNLIKSARV
GYTKMLLGVEGYFIEHKSRNSLLFQPTDSSAEDFMKSHVEPTIRDVPVLLELAPWFGRKHRDNTLTLKRFSSGVGFWCLG
GAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKVKGSCQIEKAANESAHFMRFYVPC
PHCGEEQYLKFGDGSTPFGLKWEKSKPETVYYLCEHNGCVIRQSELDQKAGRWICDNTGMWTRDGLAYFSASGEEVPPPR
SITFHIWTAYSPFTTWIQIIYDWLDALKDPNGVKTFINTTLGEPYEEAVAEKLSHELLLEKVIHYAAPVPERVVYLTAGI
DSQRNRYEMYVWGWAPGEEAFLIDKQIIMGRHDDEDTLQRVDAVINKKYRHADGTDISISRICWDIGGIDAEIVYKRSKK
HGIFRVLPVKGASVYGKPVITMPKKRNQSGVFLCEIGTDTAKEMLYARMGAVTAPADEATPYAIRFPDNPDVFTEVEAKQ
LVAEELVEKLVNGKFRLLWDAKGRRNEALDCLVYASAALRVSVQRWQLDLEALATSRKSEEQDTPTLEQLAAMLAGGVNG
NNH

Sequences:

>Translated_643_residues
MISGERRANNANRAITNGLIALHIPVPLTTVQWADEYYYLPKESSYTPGKWETLPFQVAIMNAMGYELIRVVNLIKSARV
GYTKMLLGVEGYFIEHKSRNSLLFQPTDSSAEDFMKSHVEPTIRDVPVLLELAPWFGRKHRDNTLTLKRFSSGVGFWCLG
GAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKVKGSCQIEKAANESAHFMRFYVPC
PHCGEEQYLKFGDGSTPFGLKWEKSKPETVYYLCEHNGCVIRQSELDQKAGRWICDNTGMWTRDGLAYFSASGEEVPPPR
SITFHIWTAYSPFTTWIQIIYDWLDALKDPNGVKTFINTTLGEPYEEAVAEKLSHELLLEKVIHYAAPVPERVVYLTAGI
DSQRNRYEMYVWGWAPGEEAFLIDKQIIMGRHDDEDTLQRVDAVINKKYRHADGTDISISRICWDIGGIDAEIVYKRSKK
HGIFRVLPVKGASVYGKPVITMPKKRNQSGVFLCEIGTDTAKEMLYARMGAVTAPADEATPYAIRFPDNPDVFTEVEAKQ
LVAEELVEKLVNGKFRLLWDAKGRRNEALDCLVYASAALRVSVQRWQLDLEALATSRKSEEQDTPTLEQLAAMLAGGVNG
NNH
>Mature_643_residues
MISGERRANNANRAITNGLIALHIPVPLTTVQWADEYYYLPKESSYTPGKWETLPFQVAIMNAMGYELIRVVNLIKSARV
GYTKMLLGVEGYFIEHKSRNSLLFQPTDSSAEDFMKSHVEPTIRDVPVLLELAPWFGRKHRDNTLTLKRFSSGVGFWCLG
GAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKVKGSCQIEKAANESAHFMRFYVPC
PHCGEEQYLKFGDGSTPFGLKWEKSKPETVYYLCEHNGCVIRQSELDQKAGRWICDNTGMWTRDGLAYFSASGEEVPPPR
SITFHIWTAYSPFTTWIQIIYDWLDALKDPNGVKTFINTTLGEPYEEAVAEKLSHELLLEKVIHYAAPVPERVVYLTAGI
DSQRNRYEMYVWGWAPGEEAFLIDKQIIMGRHDDEDTLQRVDAVINKKYRHADGTDISISRICWDIGGIDAEIVYKRSKK
HGIFRVLPVKGASVYGKPVITMPKKRNQSGVFLCEIGTDTAKEMLYARMGAVTAPADEATPYAIRFPDNPDVFTEVEAKQ
LVAEELVEKLVNGKFRLLWDAKGRRNEALDCLVYASAALRVSVQRWQLDLEALATSRKSEEQDTPTLEQLAAMLAGGVNG
NNH

Specific function: Unknown

COG id: COG5525

COG function: function code R; Bacteriophage tail assembly protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To phage lambda terminase large subunit in the N- terminal section [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003458
- InterPro:   IPR008866 [H]

Pfam domain/function: PF02413 Caudo_TAP; PF05876 Terminase_GpA [H]

EC number: NA

Molecular weight: Translated: 72497; Mature: 72497

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISGERRANNANRAITNGLIALHIPVPLTTVQWADEYYYLPKESSYTPGKWETLPFQVAI
CCCCCCCCCCCCHHHHCCEEEEEECCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEEEE
MNAMGYELIRVVNLIKSARVGYTKMLLGVEGYFIEHKSRNSLLFQPTDSSAEDFMKSHVE
HHHHHHHHHHHHHHHHHHCCCHHHHEECCCEEEEEECCCCCEEEECCCCCHHHHHHHCCC
PTIRDVPVLLELAPWFGRKHRDNTLTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDEL
CCHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECCHHHCCHHHCCCCEEEECCC
SSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKVKGSCQIEKAANESAHFMRFYVPC
CCCCCCCCCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCCEEEEHHCCCCCEEEEEEECC
PHCGEEQYLKFGDGSTPFGLKWEKSKPETVYYLCEHNGCVIRQSELDQKAGRWICDNTGM
CCCCCHHEEEECCCCCCCCEEECCCCCCEEEEEEECCCEEEEHHHHHHHHCCEEECCCCC
WTRDGLAYFSASGEEVPPPRSITFHIWTAYSPFTTWIQIIYDWLDALKDPNGVKTFINTT
CCCCCCEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LGEPYEEAVAEKLSHELLLEKVIHYAAPVPERVVYLTAGIDSQRNRYEMYVWGWAPGEEA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCE
FLIDKQIIMGRHDDEDTLQRVDAVINKKYRHADGTDISISRICWDIGGIDAEIVYKRSKK
EEEEHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCEEEEEECCC
HGIFRVLPVKGASVYGKPVITMPKKRNQSGVFLCEIGTDTAKEMLYARMGAVTAPADEAT
CCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCC
PYAIRFPDNPDVFTEVEAKQLVAEELVEKLVNGKFRLLWDAKGRRNEALDCLVYASAALR
CEEEECCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHEEEHHHHE
VSVQRWQLDLEALATSRKSEEQDTPTLEQLAAMLAGGVNGNNH
EEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MISGERRANNANRAITNGLIALHIPVPLTTVQWADEYYYLPKESSYTPGKWETLPFQVAI
CCCCCCCCCCCCHHHHCCEEEEEECCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEEEE
MNAMGYELIRVVNLIKSARVGYTKMLLGVEGYFIEHKSRNSLLFQPTDSSAEDFMKSHVE
HHHHHHHHHHHHHHHHHHCCCHHHHEECCCEEEEEECCCCCEEEECCCCCHHHHHHHCCC
PTIRDVPVLLELAPWFGRKHRDNTLTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDEL
CCHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECCHHHCCHHHCCCCEEEECCC
SSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKVKGSCQIEKAANESAHFMRFYVPC
CCCCCCCCCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCCEEEEHHCCCCCEEEEEEECC
PHCGEEQYLKFGDGSTPFGLKWEKSKPETVYYLCEHNGCVIRQSELDQKAGRWICDNTGM
CCCCCHHEEEECCCCCCCCEEECCCCCCEEEEEEECCCEEEEHHHHHHHHCCEEECCCCC
WTRDGLAYFSASGEEVPPPRSITFHIWTAYSPFTTWIQIIYDWLDALKDPNGVKTFINTT
CCCCCCEEEECCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LGEPYEEAVAEKLSHELLLEKVIHYAAPVPERVVYLTAGIDSQRNRYEMYVWGWAPGEEA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCE
FLIDKQIIMGRHDDEDTLQRVDAVINKKYRHADGTDISISRICWDIGGIDAEIVYKRSKK
EEEEHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCEEEEEECCC
HGIFRVLPVKGASVYGKPVITMPKKRNQSGVFLCEIGTDTAKEMLYARMGAVTAPADEAT
CCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCC
PYAIRFPDNPDVFTEVEAKQLVAEELVEKLVNGKFRLLWDAKGRRNEALDCLVYASAALR
CEEEECCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHEEEHHHHE
VSVQRWQLDLEALATSRKSEEQDTPTLEQLAAMLAGGVNGNNH
EEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]