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The map label for this gene is yfhH [H]

Identifier: 16765892

GI number: 16765892

Start: 2717588

End: 2718436

Strand: Direct

Name: yfhH [H]

Synonym: STM2572

Alternate gene names: 16765892

Gene position: 2717588-2718436 (Clockwise)

Preceding gene: 16765887

Following gene: 16765895

Centisome position: 55.95

GC content: 57.24

Gene sequence:

>849_bases
ATGAACTGTTTGATTCGTATTCGCCAGCGTTATCCGGATCTCGCGCAAAGCGACAGGAAACTGGCGGATTATCTGCTCGC
GCAACCGGATACGGCGCGGCATCTGAGCTCGCAGCAACTGGCGGCTGAAGCGGGCGTCAGCCAATCCAGCGTAGTCAAGT
TCGCGCAAAAACTGGGGTTTAAAGGGTTTCCGGCGTTGAAACTGGCTCTCAGCGAAGCGTTGGCCAGCAATCCTAATCCG
CATTCCGTTCCCGTTCATAACCAGATTCGCGGCGACGATCCGATGCGCCTGGTCGGGGAAAAATTAATTAAAGAGAATGT
GGCGGCGATGCACGCCACGCTGGACGTTAACAGTGAAGAAAAGCTGTTAGAAAGCGTCACGATGCTGCGCCACGCCCGCC
GTATTGTGATCACCGGGATTGGCGCCTCTGGGCTGGTGGCGCAAAATTTTGCCTGGAAGCTACTGAAGATTGGCATTAAC
GCGGTGGTTGAGCGCGATATGCACGCCCTGCTGGCGACGGTGCAGGCGCTGGCGCCGGAGGATCTGCTGCTGGCGATCTC
TTATTCCGGGGAACGGCGCGAGCTGAACCTGGCGGCGGACGAAACATTACGCGCAGGCGCGAAGATCCTGGCCATTACCG
GTTTTTCTCCCAACGCCTTGCAGCAGCGCGCCACCCGCTGTCTGTATACGATTGCTGAAGAGCAGGCGACGCGCAGCGCC
GCTATCTCCTCGACACATGCGCAAATGATGTTGACCGACTTACTGTTTATGGCGCTGGTACAACAGGATTTAGAGCGGGC
GCCGGAGCGTATTCGCCATAGCGAGGCGCTGGTAAAAAAACTGGTTTGA

Upstream 100 bases:

>100_bases
ATTTTTAATTCATAATAAGCGTCCATGATGGAATAGAATATTCCCCCAGGCGAGTGAAATTTCGTTTTGTCGTCGCCATC
ACGTTTCGCAGGAGCTGCCC

Downstream 100 bases:

>100_bases
AAATGGCTCTTCCGCCTCATGCAGAAGAGCTATCAAGTTTATTGCGCTTCTTTAGCGTGAATCAATTGCGTCAGGAGTTT
GTTAACCGGTACGGCAATAT

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNCLIRIRQRYPDLAQSDRKLADYLLAQPDTARHLSSQQLAAEAGVSQSSVVKFAQKLGFKGFPALKLALSEALASNPNP
HSVPVHNQIRGDDPMRLVGEKLIKENVAAMHATLDVNSEEKLLESVTMLRHARRIVITGIGASGLVAQNFAWKLLKIGIN
AVVERDMHALLATVQALAPEDLLLAISYSGERRELNLAADETLRAGAKILAITGFSPNALQQRATRCLYTIAEEQATRSA
AISSTHAQMMLTDLLFMALVQQDLERAPERIRHSEALVKKLV

Sequences:

>Translated_282_residues
MNCLIRIRQRYPDLAQSDRKLADYLLAQPDTARHLSSQQLAAEAGVSQSSVVKFAQKLGFKGFPALKLALSEALASNPNP
HSVPVHNQIRGDDPMRLVGEKLIKENVAAMHATLDVNSEEKLLESVTMLRHARRIVITGIGASGLVAQNFAWKLLKIGIN
AVVERDMHALLATVQALAPEDLLLAISYSGERRELNLAADETLRAGAKILAITGFSPNALQQRATRCLYTIAEEQATRSA
AISSTHAQMMLTDLLFMALVQQDLERAPERIRHSEALVKKLV
>Mature_282_residues
MNCLIRIRQRYPDLAQSDRKLADYLLAQPDTARHLSSQQLAAEAGVSQSSVVKFAQKLGFKGFPALKLALSEALASNPNP
HSVPVHNQIRGDDPMRLVGEKLIKENVAAMHATLDVNSEEKLLESVTMLRHARRIVITGIGASGLVAQNFAWKLLKIGIN
AVVERDMHALLATVQALAPEDLLLAISYSGERRELNLAADETLRAGAKILAITGFSPNALQQRATRCLYTIAEEQATRSA
AISSTHAQMMLTDLLFMALVQQDLERAPERIRHSEALVKKLV

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082130, Length=282, Percent_Identity=83.3333333333333, Blast_Score=478, Evalue=1e-136,
Organism=Escherichia coli, GI1788767, Length=284, Percent_Identity=35.5633802816901, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1788159, Length=281, Percent_Identity=25.6227758007117, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082369, Length=272, Percent_Identity=20.5882352941176, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30926; Mature: 30926

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCLIRIRQRYPDLAQSDRKLADYLLAQPDTARHLSSQQLAAEAGVSQSSVVKFAQKLGF
CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
KGFPALKLALSEALASNPNPHSVPVHNQIRGDDPMRLVGEKLIKENVAAMHATLDVNSEE
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
KLLESVTMLRHARRIVITGIGASGLVAQNFAWKLLKIGINAVVERDMHALLATVQALAPE
HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DLLLAISYSGERRELNLAADETLRAGAKILAITGFSPNALQQRATRCLYTIAEEQATRSA
CEEEEEECCCCCCEEECHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
AISSTHAQMMLTDLLFMALVQQDLERAPERIRHSEALVKKLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNCLIRIRQRYPDLAQSDRKLADYLLAQPDTARHLSSQQLAAEAGVSQSSVVKFAQKLGF
CCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
KGFPALKLALSEALASNPNPHSVPVHNQIRGDDPMRLVGEKLIKENVAAMHATLDVNSEE
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
KLLESVTMLRHARRIVITGIGASGLVAQNFAWKLLKIGINAVVERDMHALLATVQALAPE
HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DLLLAISYSGERRELNLAADETLRAGAKILAITGFSPNALQQRATRCLYTIAEEQATRSA
CEEEEEECCCCCCEEECHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
AISSTHAQMMLTDLLFMALVQQDLERAPERIRHSEALVKKLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1602968; 7984428 [H]