| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is xseA [H]
Identifier: 16765832
GI number: 16765832
Start: 2626079
End: 2627428
Strand: Direct
Name: xseA [H]
Synonym: STM2512
Alternate gene names: 16765832
Gene position: 2626079-2627428 (Clockwise)
Preceding gene: 16765828
Following gene: 16765853
Centisome position: 54.06
GC content: 58.07
Gene sequence:
>1350_bases ATGTTATCCTCTCAAACTTCCTCAATTTTTACCGTAAGCCGCCTTAACCAGACGGTTCGTCTGCTGTTAGAACAGGAGAT GGGACAGGTATGGATCAGCGGCGAGATTTCTAATTTCACGCAGCCTGCGTCGGGCCACTGGTACTTTACGCTCAAAGACG ATACCGCTCAGGTGCGCTGTGCGATGTTCCGTAACAGCAATCGCCGGGTGACGTTCCGCCCGCAGCACGGGCAGCAGGTG CTGGTACGCGCCAACATTACGCTGTACGAGCCGCGCGGCGATTATCAAATCATCGCCGAAAGTATGCAGCCCGCGGGCGA AGGCTTGTTGCAGCAGAAATATGAGCAGCTAAAAGCCAAACTGCAGGCCGAAGGCTTGTTCGATCAGCAGCATAAACAGC CGTTGCCCTCCCCGGCCCACTGCGTTGGGGTGATCACTTCGAAAACCGGCGCGGCGCTGCACGATATTCTCCACGTGCTA AAGCGTCGTGACCCATCCCTGCCCGTTATTATCTATCCAACCGCAGTCCAGGGCGACGACGCGCCGGGGCAGATCGTTCG TGCTATCGAACTGGCGAACGCGCGCGGCGAATGTGATGTACTGATCGTCGGGCGCGGCGGCGGTTCGCTGGAAGATTTGT GGAGTTTTAACGACGAACGCGTGGCGCGGGCGATTTTTGCCAGCCGCATTCCGGTGGTCAGCGCCGTCGGTCACGAAACG GACGTCACGATAGCTGATTTTGTCGCCGACCTGCGCGCGCCTACGCCATCAGCAGCGGCAGAAATTGTCAGCCGTAACCA GCAGGAGTTGTTGCGTCAGATCCAGTCCGCCCAGCAGCGTCTGGGCATGGCGATGGACTACTACCTCGCCAATCGCAGCC GCCGTTTCACGCAGATTTTTCACCGTCTGCAACAGCAACATCCGCAACTGCGTCTGGCCCGTCAGCAAACCGCGCTGGAA CGTCTACGCCAACGGATGGGATTTGCGCTTGAGGCCAGGATTAAGCAGGCCAATCAACGCCAACAGTGCGTAAGTCAACG CCTGAGCCAGCAAAATCCGCAGCCGCGCATTCACCGCGCGCAGTCGCGCATCCAACAGCTTGAATATCGTCTGACGGAGA ATATCCGCTCACGGTTAAGCGAACAGCGCGAGCGTTTTGGCAACGCGGTCACGCATCTGGAAGCGGTCAGCCCGTTAGCC ACGCTGGCGCGCGGCTATACGGTTTCGACGACAACGGACGGCAAGGTGCTGAAAAAGATCAAACAGGTCAAAGCAGGCGA TATCATGACCACGAGACTGGAGGACGGCTGGCTTGAAAGTGAAGTCAAATCCGTCACGCCGGGCACGTAA
Upstream 100 bases:
>100_bases GGTTGCATCTACATTTTTTTGCAAATAGTGCTTGCGATCCCCCGTGAGCAGGTTACTATCGATTGAATAACCTGCTGATT TAGAATTTGATCCCGCTCAC
Downstream 100 bases:
>100_bases TCCAACACTCCCCCACCCTTTGCAGCGCGATGTTGGGTTTCGACTTCGCCTCAGCCAACCTACGCGCCACGTCGGATAAG GTGTAGCCATAATCTGACGA
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 449; Mature: 449
Protein sequence:
>449_residues MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQV LVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAKLQAEGLFDQQHKQPLPSPAHCVGVITSKTGAALHDILHVL KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET DVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIFHRLQQQHPQLRLARQQTALE RLRQRMGFALEARIKQANQRQQCVSQRLSQQNPQPRIHRAQSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLA TLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT
Sequences:
>Translated_449_residues MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQV LVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAKLQAEGLFDQQHKQPLPSPAHCVGVITSKTGAALHDILHVL KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET DVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIFHRLQQQHPQLRLARQQTALE RLRQRMGFALEARIKQANQRQQCVSQRLSQQNPQPRIHRAQSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLA TLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT >Mature_449_residues MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQV LVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAKLQAEGLFDQQHKQPLPSPAHCVGVITSKTGAALHDILHVL KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET DVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIFHRLQQQHPQLRLARQQTALE RLRQRMGFALEARIKQANQRQQCVSQRLSQQNPQPRIHRAQSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLA TLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=447, Percent_Identity=87.4720357941834, Blast_Score=808, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 50614; Mature: 50614
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRC CCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHH AMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAK HHHCCCCCEEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH LQAEGLFDQQHKQPLPSPAHCVGVITSKTGAALHDILHVLKRRDPSLPVIIYPTAVQGDD HHHCCCCCHHHCCCCCCHHHEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC APGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET CHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHCCCCC DVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIF CCHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHH HRLQQQHPQLRLARQQTALERLRQRMGFALEARIKQANQRQQCVSQRLSQQNPQPRIHRA HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLATLARGYTVSTTTDGKVLKKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHH KQVKAGDIMTTRLEDGWLESEVKSVTPGT HHHHCCCEEEEECCCCHHHHHHHHCCCCC >Mature Secondary Structure MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRC CCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHH AMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAK HHHCCCCCEEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH LQAEGLFDQQHKQPLPSPAHCVGVITSKTGAALHDILHVLKRRDPSLPVIIYPTAVQGDD HHHCCCCCHHHCCCCCCHHHEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC APGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET CHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHCCCCC DVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIF CCHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHH HRLQQQHPQLRLARQQTALERLRQRMGFALEARIKQANQRQQCVSQRLSQQNPQPRIHRA HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLATLARGYTVSTTTDGKVLKKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHH KQVKAGDIMTTRLEDGWLESEVKSVTPGT HHHHCCCEEEEECCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA