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The map label for this gene is rfbV

Identifier: 16765417

GI number: 16765417

Start: 2167619

End: 2168620

Strand: Reverse

Name: rfbV

Synonym: STM2087

Alternate gene names: 16765417

Gene position: 2168620-2167619 (Counterclockwise)

Preceding gene: 16765418

Following gene: 16765416

Centisome position: 44.65

GC content: 32.34

Gene sequence:

>1002_bases
ATGCTTATATCATTTTGTATTCCAACTTATAATAGAAAAGAATATCTTGAAGAGTTGTTGAATAGTATAAATAATCAGGA
AAAATTTAATTTAGATATTGAGATATGTATATCAGATAATGCCTCTACTGATGGTACAGAGGAAATGATTGATGTTTGGA
GGAACAATTATAATTTCCCAATAATATATCGGCGTAATAGCGTTAACCTTGGGCCAGATAGGAATTTTCTTGCTTCAGTA
TCCCTTGCGAATGGGGATTATTGTTGGATATTTGGCAGTGATGATGCTCTTGCGAAAGACTCGTTAGCGATATTACAAAC
TTATCTCGATTCTCAAGCAGATATATATTTATGTGACAGAAAAGAGACCGGGTGTGATTTAGTTGAGATTAGAAACCCTC
ATCGTTCTTGGCTCAGAACAGATGATGAACTTTATGTGTTTAATAATAATTTAGATAGGGAAATCTATCTCAGTAGATGC
TTATCTATTGGTGGTGTATTTAGCTATCTAAGTTCTTTAATAGTAAAAAAAGAACGATGGGATGCCATTGATTTTGATGC
GTCCTATATTGGCACTTCCTATCCTCATGTATTTATCATGATGAGCGTATTTAATACGCCAGGGTGCCTTTTGCATTATA
TATCAAAACCACTCGTAATATGCCGAGGAGATAATGATAGTTTCGAGAAGAAAGGAAAGGCCAGACGAATTTTAATTGAT
TTTATTGCATATTTAAAATTAGCTAATGATTTTTACAGTAAAAATATATCTTTAAAACGAGCATTTGAAAATGTTTTGCT
AAAAGAGAGACCATGGTTATATACAACTTTGGCTATGGCATGTTATGGCAATAGTGATGAAAAAAGAGATTTATCTGAAT
TTTATGCAAAGCTAGGTTGTAATAAAAATATGATCAACACTGTACTTCGATTTGGGAAACTAGCATATGCAGTGAAAAAT
ATTACCGTGCTTAAGAATTTTACTAAACGGATAATTAAGTAG

Upstream 100 bases:

>100_bases
ATCAGTGGAGTGCTGCTTGGCTTGATTATATCTTTTGCTTTAACTGTTTTTTGGGGGCTTCCACTAACTTACTTAATTAA
GGCAAATAAGGGATAATCAT

Downstream 100 bases:

>100_bases
TAGTAAGTTATTATATTGAGATTAAATGTAGATTTAACCTTTCTGGATTCAGCTAGATTTACGTTACTGACTTTTCTTTT
TAATGAAAAATCATATTTGA

Product: abequosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MLISFCIPTYNRKEYLEELLNSINNQEKFNLDIEICISDNASTDGTEEMIDVWRNNYNFPIIYRRNSVNLGPDRNFLASV
SLANGDYCWIFGSDDALAKDSLAILQTYLDSQADIYLCDRKETGCDLVEIRNPHRSWLRTDDELYVFNNNLDREIYLSRC
LSIGGVFSYLSSLIVKKERWDAIDFDASYIGTSYPHVFIMMSVFNTPGCLLHYISKPLVICRGDNDSFEKKGKARRILID
FIAYLKLANDFYSKNISLKRAFENVLLKERPWLYTTLAMACYGNSDEKRDLSEFYAKLGCNKNMINTVLRFGKLAYAVKN
ITVLKNFTKRIIK

Sequences:

>Translated_333_residues
MLISFCIPTYNRKEYLEELLNSINNQEKFNLDIEICISDNASTDGTEEMIDVWRNNYNFPIIYRRNSVNLGPDRNFLASV
SLANGDYCWIFGSDDALAKDSLAILQTYLDSQADIYLCDRKETGCDLVEIRNPHRSWLRTDDELYVFNNNLDREIYLSRC
LSIGGVFSYLSSLIVKKERWDAIDFDASYIGTSYPHVFIMMSVFNTPGCLLHYISKPLVICRGDNDSFEKKGKARRILID
FIAYLKLANDFYSKNISLKRAFENVLLKERPWLYTTLAMACYGNSDEKRDLSEFYAKLGCNKNMINTVLRFGKLAYAVKN
ITVLKNFTKRIIK
>Mature_333_residues
MLISFCIPTYNRKEYLEELLNSINNQEKFNLDIEICISDNASTDGTEEMIDVWRNNYNFPIIYRRNSVNLGPDRNFLASV
SLANGDYCWIFGSDDALAKDSLAILQTYLDSQADIYLCDRKETGCDLVEIRNPHRSWLRTDDELYVFNNNLDREIYLSRC
LSIGGVFSYLSSLIVKKERWDAIDFDASYIGTSYPHVFIMMSVFNTPGCLLHYISKPLVICRGDNDSFEKKGKARRILID
FIAYLKLANDFYSKNISLKRAFENVLLKERPWLYTTLAMACYGNSDEKRDLSEFYAKLGCNKNMINTVLRFGKLAYAVKN
ITVLKNFTKRIIK

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RFBV_SALTY (P26401)

Other databases:

- EMBL:   X56793
- EMBL:   AE006468
- PIR:   S15309
- RefSeq:   NP_461032.1
- ProteinModelPortal:   P26401
- PRIDE:   P26401
- GeneID:   1253608
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM2087
- NMPDR:   fig|99287.1.peg.2012
- HOGENOM:   HBG490424
- OMA:   IANGEYC
- ProtClustDB:   CLSK894269
- BioCyc:   STYP99287:STM2087-MONOMER
- InterPro:   IPR001173

Pfam domain/function: PF00535 Glycos_transf_2

EC number: NA

Molecular weight: Translated: 38580; Mature: 38580

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLISFCIPTYNRKEYLEELLNSINNQEKFNLDIEICISDNASTDGTEEMIDVWRNNYNFP
CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCE
IIYRRNSVNLGPDRNFLASVSLANGDYCWIFGSDDALAKDSLAILQTYLDSQADIYLCDR
EEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECC
KETGCDLVEIRNPHRSWLRTDDELYVFNNNLDREIYLSRCLSIGGVFSYLSSLIVKKERW
CCCCCCEEEECCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DAIDFDASYIGTSYPHVFIMMSVFNTPGCLLHYISKPLVICRGDNDSFEKKGKARRILID
CEECCCHHHCCCCCCHHEEEEEHHCCCHHHHHHHCCCEEEEECCCCCHHHCCCHHHHHHH
FIAYLKLANDFYSKNISLKRAFENVLLKERPWLYTTLAMACYGNSDEKRDLSEFYAKLGC
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCC
NKNMINTVLRFGKLAYAVKNITVLKNFTKRIIK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLISFCIPTYNRKEYLEELLNSINNQEKFNLDIEICISDNASTDGTEEMIDVWRNNYNFP
CEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCE
IIYRRNSVNLGPDRNFLASVSLANGDYCWIFGSDDALAKDSLAILQTYLDSQADIYLCDR
EEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECC
KETGCDLVEIRNPHRSWLRTDDELYVFNNNLDREIYLSRCLSIGGVFSYLSSLIVKKERW
CCCCCCEEEECCCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DAIDFDASYIGTSYPHVFIMMSVFNTPGCLLHYISKPLVICRGDNDSFEKKGKARRILID
CEECCCHHHCCCCCCHHEEEEEHHCCCHHHHHHHCCCEEEEECCCCCHHHCCCHHHHHHH
FIAYLKLANDFYSKNISLKRAFENVLLKERPWLYTTLAMACYGNSDEKRDLSEFYAKLGC
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCC
NKNMINTVLRFGKLAYAVKNITVLKNFTKRIIK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609