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The map label for this gene is cspB [H]

Identifier: 16765332

GI number: 16765332

Start: 2079225

End: 2079437

Strand: Reverse

Name: cspB [H]

Synonym: STM1996

Alternate gene names: 16765332

Gene position: 2079437-2079225 (Counterclockwise)

Preceding gene: 16765333

Following gene: 16765330

Centisome position: 42.81

GC content: 41.78

Gene sequence:

>213_bases
ATGACGACGAAAATCACTGGTTTAGTAAAATGGTTTAACCCTGAAAAGGGCTTTGGTTTCATTACGCCTAAAGATGGCAG
CAAAGATGTGTTTGTGCATTTTTCAGCCATTCAAAGTAATGAATTCCGCACTCTGAATGAAAATCAGGAAGTGGAGTTTT
CAGTAGAGCAGGGACCAAAAGGTCCATCAGCGGTCAACGTTGTGGCGCTTTAA

Upstream 100 bases:

>100_bases
CATCATTTGTTCCTCTTGAGATCTCCTTTAGGTTTTTTTCTCTCTGATAATTTTCTTCAGGCCATTTTGCCCAAGGGCTC
ATTCGAAAGGTAACAATATT

Downstream 100 bases:

>100_bases
GGCAACTGATATTACTAATAAAATTCACTTCCGGTGTCCATGTTGCCATGGTTCACAATACAGAACATCGACATTCGATG
TTACTGAGCAAAACCCGTTT

Product: cold-shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPKGPSAVNVVAL

Sequences:

>Translated_70_residues
MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPKGPSAVNVVAL
>Mature_69_residues
TTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPKGPSAVNVVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586884, Length=73, Percent_Identity=43.8356164383562, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI224586882, Length=72, Percent_Identity=44.4444444444444, Blast_Score=63, Evalue=7e-11,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=84.2857142857143, Blast_Score=127, Evalue=2e-31,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=80, Blast_Score=123, Evalue=2e-30,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=69.1176470588235, Blast_Score=105, Evalue=6e-25,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=64.2857142857143, Blast_Score=104, Evalue=1e-24,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=72.0588235294118, Blast_Score=103, Evalue=2e-24,
Organism=Escherichia coli, GI1788126, Length=68, Percent_Identity=70.5882352941177, Blast_Score=101, Evalue=9e-24,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=54.8387096774194, Blast_Score=77, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17533635, Length=71, Percent_Identity=43.6619718309859, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=50.8196721311475, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7745; Mature: 7614

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPK
CCCCCEEEEEEECCCCCCEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCC
GPSAVNVVAL
CCCEEEEEEC
>Mature Secondary Structure 
TTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPK
CCCCEEEEEEECCCCCCEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCC
GPSAVNVVAL
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]